Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.5e-207 726.1 404 100.0
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.2e-39 168.3 449 39.4
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 3.1e-35 153.7 431 36.4
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 8.9e-35 152.1 462 33.3
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.3e-33 148.3 452 35.6
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.7e-33 147.9 449 37.4
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 2.2e-33 147.5 411 39.7
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.4e-32 144.8 436 35.8
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 2.4e-32 144.1 440 35.9
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.1e-31 141.0 451 34.4
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.0e-30 138.7 434 35.5
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 8.6e-30 135.6 398 35.2
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.1e-29 135.2 426 35.9
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.5e-29 134.0 444 33.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.6e-28 131.3 398 34.9
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 6.2e-28 129.4 401 34.2
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 8.1e-28 129.0 256 39.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 2.3e-27 127.5 148 51.4
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.3e-27 127.5 459 34.6
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.2e-26 125.2 159 46.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-26 124.4 460 31.7
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 5.8e-26 122.9 425 32.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 5.8e-26 122.9 153 52.9
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.8e-26 122.9 468 33.5
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.8e-26 122.9 248 40.7
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 7.5e-26 122.5 461 36.0
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 9.9e-26 122.1 461 33.0
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 9.9e-26 122.1 485 30.5
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.3e-25 121.7 195 46.7
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.7e-25 121.3 372 35.8
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.2e-25 120.9 456 31.4
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.2e-25 120.9 456 31.4
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 3.7e-25 120.2 253 43.5
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.9e-25 119.8 154 50.6
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 6.4e-25 119.4 376 36.4
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 8.3e-25 119.0 393 33.3
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.4e-24 118.2 242 38.0
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.4e-24 117.5 429 34.5
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.4e-24 117.5 486 31.1
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 3.2e-24 117.1 424 32.5
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.2e-24 117.1 459 36.2
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.7e-23 114.0 236 45.3
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.3e-22 111.7 150 54.7
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.7e-22 111.3 426 33.1
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 1.7e-22 111.3 428 32.9
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.7e-22 111.3 255 36.1
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 2.3e-22 110.9 434 31.1
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 3.9e-22 110.2 296 36.1
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 5.1e-22 109.8 428 32.9
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 5.1e-22 109.8 428 32.9
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 5.1e-22 109.8 361 30.5
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 5.1e-22 109.8 152 48.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 5.1e-22 109.8 141 45.4
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 6.6e-22 109.4 226 46.0
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 8.6e-22 109.0 149 49.7
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.1e-21 108.6 435 32.0
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.1e-21 108.6 408 36.8
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.1e-21 108.6 488 32.8
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.9e-21 107.8 278 43.5
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.5e-21 107.5 267 34.8
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 4.3e-21 106.7 431 32.3
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.6e-21 106.3 230 43.0
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 7.3e-21 105.9 230 43.9
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.3e-21 105.9 230 43.9
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 7.3e-21 105.9 495 32.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 7.3e-21 105.9 403 32.0
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 9.5e-21 105.5 252 38.1
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 9.5e-21 105.5 432 33.3
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.2e-20 105.1 336 35.7
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.2e-20 105.1 249 41.0
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.6e-20 104.8 409 34.7
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 2.8e-20 104.0 421 33.0
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 6.2e-20 102.8 415 30.1
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.2e-20 102.8 398 31.7
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 8.1e-20 102.4 398 35.4
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.4e-19 101.7 438 32.9
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.4e-19 101.7 382 33.5
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.8e-19 101.3 426 32.4
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.8e-19 101.3 402 35.3
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.8e-19 101.3 441 30.4
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 2.4e-19 100.9 261 36.0
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 4.0e-19 100.1 472 30.1
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 6.8e-19 99.4 149 50.3
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-18 98.6 406 32.3
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 1.5e-18 98.2 400 33.8
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.5e-18 98.2 271 35.4
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 1.5e-18 98.2 142 49.3
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 5.8e-18 96.3 440 31.4
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.3e-17 95.1 423 34.5
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.7e-17 94.7 140 42.1
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.7e-17 94.7 143 41.3
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.7e-17 94.7 153 44.4
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.2e-17 94.4 144 43.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.2e-17 94.4 506 29.8
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 4.9e-17 93.2 424 32.8
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 6.4e-17 92.8 411 32.4
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 8.4e-17 92.4 418 32.5
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.4e-16 91.7 152 40.1
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 7.1e-16 89.4 143 54.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 1.2e-15 88.6 154 44.2
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.5e-15 87.0 168 36.9
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.5e-15 87.0 168 36.9
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.5e-15 87.0 152 38.8
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 7.8e-15 85.9 426 30.5
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.3e-14 85.1 409 32.0
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.3e-14 85.1 135 41.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.7e-14 84.7 147 38.8
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 3.0e-14 84.0 379 34.3
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 6.6e-14 82.8 140 41.4
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 8.7e-14 82.4 474 29.7
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.9e-13 81.3 434 33.6
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.9e-13 81.3 154 35.7
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.1e-12 77.8 155 36.1
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.8e-12 77.4 414 31.9
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 2.8e-12 77.4 442 27.8
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 3.6e-12 77.0 143 37.1
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 6.2e-12 76.3 120 45.0
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 8.1e-12 75.9 53 69.8
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.1e-11 75.5 376 34.8
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.8e-11 74.7 428 32.0
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.8e-11 74.7 431 27.1
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 2.4e-11 74.3 414 29.5
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 4.0e-11 73.6 343 31.8
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 7.6e-10 69.3 433 28.4
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 8.4e-09 65.9 42 64.3
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.1e-08 65.5 130 43.8
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 3.2e-08 63.9 131 44.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 7.8e-07 59.3 396 28.8
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 6.6e-06 56.2 169 34.9


User provided reference genes

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