Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 4.6e-169 597.8 303 100.0
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 1.7e-67 260.4 271 57.2
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 2.3e-67 260.0 298 51.0
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 1.1e-66 257.7 283 53.4
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 9.5e-66 254.6 264 54.9
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 3.6e-65 252.7 288 52.4
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 3.6e-65 252.7 282 52.5
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 4.7e-65 252.3 302 51.3
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 8.1e-65 251.5 282 52.5
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 1.4e-64 250.8 268 53.4
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 3.1e-64 249.6 284 52.8
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 1.2e-63 247.7 273 52.0
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 1.5e-63 247.3 261 54.4
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 3.4e-63 246.1 287 51.6
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 1.3e-62 244.2 271 52.0
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 2.9e-62 243.0 271 52.0
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 4.9e-62 242.3 271 51.3
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 8.4e-62 241.5 287 47.7
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 1.9e-61 240.4 277 49.8
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 5.4e-61 238.8 283 49.1
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 3.5e-60 236.1 274 50.0
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 6.0e-60 235.3 287 50.5
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 1.7e-59 233.8 273 49.1
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 2.3e-59 233.4 291 47.1
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 3.0e-59 233.0 269 52.0
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 6.6e-59 231.9 292 47.3
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.1e-58 231.1 282 48.2
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 1.5e-58 230.7 279 49.1
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.9e-58 230.3 279 47.7
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 9.6e-58 228.0 288 49.3
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 3.6e-57 226.1 283 48.1
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 4.7e-57 225.7 263 51.0
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 4.7e-57 225.7 267 48.7
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 6.2e-57 225.3 268 48.5
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 8.1e-57 224.9 280 49.3
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 2.4e-56 223.4 255 49.8
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 3.1e-56 223.0 302 45.0
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 3.1e-56 223.0 283 45.2
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 1.2e-55 221.1 266 47.7
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 1.5e-55 220.7 281 48.8
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 2.0e-55 220.3 258 50.4
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 2.0e-55 220.3 284 45.4
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 2.6e-55 219.9 251 50.2
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 2.6e-55 219.9 286 49.0
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 3.4e-55 219.5 283 47.7
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 4.4e-55 219.2 283 45.2
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 5.8e-55 218.8 269 48.0
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 5.8e-55 218.8 281 49.5
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 1.3e-54 217.6 277 47.3
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.7e-54 217.2 255 49.0
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 2.2e-54 216.9 283 44.9
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 4.9e-54 215.7 268 50.7
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 6.4e-54 215.3 278 46.8
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 8.4e-54 214.9 297 47.1
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 1.1e-53 214.5 269 49.1
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 2.4e-53 213.4 252 50.8
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 3.2e-53 213.0 287 44.9
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 9.3e-53 211.5 272 47.4
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 1.2e-52 211.1 285 45.6
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 1.0e-51 208.0 258 49.6
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 1.7e-51 207.2 282 45.0
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 3.0e-51 206.5 270 46.7
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 6.6e-51 205.3 299 43.5
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 8.7e-51 204.9 303 46.5
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 8.7e-51 204.9 258 48.8
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 8.7e-51 204.9 248 48.0
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 1.1e-50 204.5 248 47.6
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 2.5e-50 203.4 248 47.6
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 4.3e-50 202.6 248 48.8
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 5.6e-50 202.2 258 47.3
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 5.6e-50 202.2 269 45.7
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 5.6e-50 202.2 298 44.0
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 1.3e-49 201.1 247 50.2
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 2.1e-49 200.3 233 47.6
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 8.1e-49 198.4 215 50.7
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.4e-48 197.6 280 43.9
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 1.4e-48 197.6 248 46.0
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 9.0e-48 194.9 270 45.9
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 9.0e-48 194.9 238 49.2
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 9.0e-48 194.9 275 44.7
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 2.0e-47 193.7 259 46.7
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.0e-47 193.7 292 42.1
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 2.6e-47 193.4 285 43.5
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 5.8e-47 192.2 255 45.9
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 9.9e-47 191.4 249 46.2
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 1.3e-46 191.0 201 52.2
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 2.2e-46 190.3 274 45.3
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 3.8e-46 189.5 310 41.0
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 6.4e-46 188.7 275 43.3
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 1.1e-45 188.0 262 45.8
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 4.2e-45 186.0 237 47.7
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 7.1e-45 185.3 241 46.9
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 9.3e-45 184.9 215 53.0
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.7e-44 183.3 273 44.3
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 1.8e-43 180.6 283 42.4
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 1.8e-43 180.6 304 38.8
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.3e-43 180.3 283 41.7
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 2.3e-43 180.3 286 42.7
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 3.9e-43 179.5 241 45.2
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 5.1e-43 179.1 285 41.8
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 5.1e-43 179.1 285 41.4
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 8.7e-43 178.3 285 42.1
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 8.7e-43 178.3 285 42.1
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 8.7e-43 178.3 241 45.6
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 8.7e-43 178.3 251 43.4
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 1.1e-42 177.9 286 42.3
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 1.1e-42 177.9 241 44.8
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 1.9e-42 177.2 296 41.2
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 2.5e-42 176.8 247 43.7
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 4.3e-42 176.0 282 41.1
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 5.6e-42 175.6 225 47.6
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 7.4e-42 175.3 285 41.8
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 9.6e-42 174.9 257 41.2
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 2.8e-41 173.3 285 40.4
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 2.8e-41 173.3 269 42.8
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 4.8e-41 172.6 255 43.5
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 8.1e-41 171.8 310 40.0
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 1.4e-40 171.0 298 40.3
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 1.4e-40 171.0 310 40.0
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 3.1e-40 169.9 250 43.6
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 5.3e-40 169.1 250 43.6
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 1.2e-39 167.9 251 43.0
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 3.4e-39 166.4 294 39.8
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 4.5e-39 166.0 241 41.9
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 4.5e-39 166.0 241 42.3
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 5.8e-39 165.6 294 39.1
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 7.6e-39 165.2 275 39.3
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 3.8e-38 162.9 276 39.5
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.9e-38 162.5 312 39.7
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 1.1e-37 161.4 243 40.7
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 1.9e-37 160.6 314 38.2
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 1.9e-37 160.6 276 39.1
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 2.4e-37 160.2 257 44.7
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 2.4e-37 160.2 257 44.7
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 7.9e-36 155.2 241 41.9
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 3.0e-35 153.3 268 37.7
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 3.9e-35 152.9 312 38.8
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 8.7e-35 151.8 297 40.1
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 1.6e-33 147.5 298 36.9
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 2.1e-33 147.1 289 37.0
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 1.8e-32 144.1 112 59.8
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 9.0e-32 141.7 268 38.1
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 9.0e-32 141.7 127 54.3
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 1.0e-30 138.3 128 47.7
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 9.3e-29 131.7 120 55.0
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.1e-28 130.6 299 36.1
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 6.7e-27 125.6 121 52.9
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 8.2e-25 118.6 268 34.3
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 5.9e-23 112.5 114 50.0
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 1.7e-22 110.9 132 45.5
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 1.7e-22 110.9 132 45.5
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 3.8e-22 109.8 93 51.6
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 3.2e-21 106.7 174 38.5
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 1.7e-17 94.4 115 45.2
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 1.7e-17 94.4 162 46.9
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 4.8e-17 92.8 180 41.7
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 2.4e-16 90.5 245 33.5
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 1.5e-15 87.8 55 67.3
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 1.4e-13 81.3 71 57.7
THA.LOC104825938 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 1.4e-08 64.7 201 28.4
BcaC01g05033 Brassica carinata HOM05D004590 ORTHO05D006056 1.0e-06 58.5 144 36.1


User provided reference genes

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