Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1692.2 853 100.0
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1335.5 855 78.8
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1315.1 853 77.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1312.7 859 77.1
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1306.2 856 77.8
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1303.9 856 76.1
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1302.3 852 78.3
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1297.0 848 75.4
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1287.3 856 76.6
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1285.8 851 75.8
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1278.8 851 75.3
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1276.9 859 75.9
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1272.3 855 76.1
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1271.5 855 76.3
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1267.3 848 74.8
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1266.5 859 75.4
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1264.6 855 75.8
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1261.1 851 74.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1258.8 853 75.1
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1258.4 852 73.9
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1258.4 851 74.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1257.3 883 73.7
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1256.9 851 74.5
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1256.5 851 74.3
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1253.4 853 74.7
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1250.3 864 74.1
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1250.3 848 73.7
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1249.6 819 77.0
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 857 74.3
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1243.0 833 74.8
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1240.7 852 72.8
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1236.5 869 73.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1233.4 852 72.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1232.6 857 73.0
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1232.6 854 73.4
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1228.4 851 73.3
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1228.0 849 73.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 851 73.1
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1218.4 848 73.5
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1217.6 852 73.6
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1217.6 857 71.1
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1217.6 856 73.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1214.9 855 73.5
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1211.8 766 78.5
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1211.1 830 74.1
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1210.3 852 72.4
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1206.4 844 73.6
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1203.0 855 71.6
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1201.0 851 71.8
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1200.7 959 66.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1196.4 851 71.4
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1196.0 861 71.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1196.0 856 72.0
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1194.9 885 69.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1194.9 851 71.6
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1194.5 851 71.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1191.8 857 70.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1189.1 773 77.4
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1189.1 868 70.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 857 70.7
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 856 70.2
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 866 70.6
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1179.5 751 79.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1178.3 845 70.7
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 855 70.1
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 938 66.3
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1168.3 853 70.1
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1167.5 853 70.1
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1166.8 907 67.4
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1164.8 847 69.5
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 856 69.2
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 838 69.8
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1158.3 854 69.3
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1157.5 855 69.2
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1156.0 835 69.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 909 66.9
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 851 68.7
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1147.5 734 78.2
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1147.5 1009 62.0
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1146.7 767 75.4
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1144.4 841 69.8
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1135.9 835 69.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1135.9 866 69.3
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1128.2 842 68.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1128.2 842 68.3
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1127.9 943 63.9
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1124.4 844 67.5
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1121.3 849 67.8
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1112.1 844 66.4
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 835 67.9
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1102.0 837 67.5
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1099.3 852 67.0
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1098.2 703 78.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1097.0 853 66.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 0.0e+00 1096.6 833 68.8
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1096.3 852 66.9
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 838 67.3
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 838 67.3
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 816 68.5
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1089.3 861 66.2
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1085.9 842 66.2
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.8e-312 1074.7 890 64.5
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.2e-303 1044.3 738 71.8
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 6.4e-301 1037.3 759 68.9
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.7e-298 1029.2 850 63.1
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.6e-291 1006.1 718 71.3
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.9e-289 999.2 717 70.0
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 5.6e-289 997.7 851 62.9
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 6.9e-287 990.7 841 63.1
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 5.8e-286 987.6 846 60.8
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.4e-278 961.8 791 63.1
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.9e-276 956.1 602 79.9
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.5e-265 919.8 742 64.4
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 3.2e-260 902.1 669 68.9
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.3e-258 896.7 533 82.9
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.4e-236 823.5 847 55.3
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 4.7e-235 818.5 857 52.6
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.1e-228 797.3 774 58.7
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 5.7e-225 785.0 539 74.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 6.1e-211 738.4 859 49.5
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.0e-210 735.7 872 48.1
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 5.7e-209 731.9 872 47.8
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.3e-204 716.1 471 76.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 4.0e-178 629.4 441 73.5
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 7.1e-175 618.6 763 48.5
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.5e-172 610.9 457 68.9
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.4e-170 604.4 537 61.1
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 5.6e-164 582.4 468 64.3
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.6e-163 579.7 393 75.1
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.8e-162 577.4 863 42.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.4e-162 577.0 383 76.0
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.3e-162 575.9 493 63.9
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 5.4e-159 565.8 472 63.1
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-148 531.2 738 45.7
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.5e-129 468.0 298 77.5
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.3e-128 464.9 460 55.0
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-122 445.3 383 60.1
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.4e-122 444.9 367 65.1
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.7e-120 438.0 352 66.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.1e-118 431.0 294 72.1
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.0e-117 428.7 311 71.1
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 3.8e-104 383.6 311 63.7
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.7e-96 358.2 287 62.7
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 6.4e-83 313.2 253 66.0
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.9e-82 311.6 205 75.6
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.6e-70 271.9 173 74.6
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 8.9e-69 266.2 185 68.1
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 3.2e-66 257.7 158 82.3
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 4.0e-61 240.7 213 60.1
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.1e-54 218.4 131 82.4
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 4.3e-47 194.1 267 45.7
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 8.1e-46 189.9 493 31.4
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.7e-43 182.2 156 64.7
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 8.7e-32 143.3 128 64.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 3.7e-30 137.9 116 63.8
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 4.8e-30 137.5 121 66.1
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 4.1e-29 134.4 72 91.7
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.5e-26 124.0 110 63.6
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.2e-22 112.1 77 74.0
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 2.6e-20 105.1 69 75.4
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-17 96.3 84 61.9
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 2.7e-17 95.1 72 68.1
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.2e-12 79.7 100 46.0
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 4.2e-10 71.2 47 74.5
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.7e-08 63.9 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 6.7e-08 63.9 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 6.7e-08 63.9 35 80.0
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 1.5e-07 62.8 69 55.1
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-06 59.7 44 68.2
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 6.3e-06 57.4 84 45.2


User provided reference genes

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