Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 5.2e-39 164.1 93 100.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 6.6e-26 120.6 91 63.7
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.1e-25 119.8 91 62.6
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 1.5e-25 119.4 98 68.4
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 5.6e-25 117.5 91 71.4
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 1.2e-24 116.3 98 67.3
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 2.1e-24 115.5 98 67.3
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 3.6e-24 114.8 91 62.6
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 4.7e-24 114.4 89 69.7
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 1.4e-23 112.8 91 68.1
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 3.1e-23 111.7 91 70.3
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 4.0e-23 111.3 91 67.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 4.0e-23 111.3 98 68.4
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 5.2e-23 110.9 98 57.1
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 5.2e-23 110.9 91 67.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 6.8e-23 110.5 98 61.2
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 6.8e-23 110.5 98 67.3
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.2e-22 109.8 91 65.9
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 2.0e-22 109.0 91 62.6
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 2.6e-22 108.6 91 65.9
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 3.4e-22 108.2 98 66.3
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 3.4e-22 108.2 91 65.9
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.4e-22 108.2 91 65.9
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.4e-22 108.2 91 65.9
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 4.4e-22 107.8 98 66.3
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 4.4e-22 107.8 98 57.1
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 5.8e-22 107.5 91 63.7
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 7.6e-22 107.1 98 65.3
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 7.6e-22 107.1 98 65.3
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 7.6e-22 107.1 91 62.6
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 7.6e-22 107.1 91 65.9
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 9.9e-22 106.7 98 65.3
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 1.3e-21 106.3 91 67.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 6.4e-21 104.0 91 63.7
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.4e-20 102.8 91 64.8
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.4e-20 102.8 91 64.8
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.4e-20 102.8 98 61.2
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.4e-20 102.1 98 64.3
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 9.2e-20 100.1 98 64.3
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 9.2e-20 100.1 93 63.4
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 9.2e-20 100.1 92 64.1
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 3.5e-19 98.2 77 64.9
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 3.5e-19 98.2 97 64.9
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 4.6e-19 97.8 98 63.3
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 6.0e-19 97.4 97 55.7
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 6.0e-19 97.4 93 63.4
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 7.8e-19 97.1 91 62.6
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 1.0e-18 96.7 98 62.2
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 1.7e-18 95.9 91 53.8
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 2.3e-18 95.5 98 65.3
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 2.3e-18 95.5 91 53.8
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 2.3e-18 95.5 91 61.5
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 2.3e-18 95.5 91 61.5
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 3.0e-18 95.1 98 64.3
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 3.0e-18 95.1 98 64.3
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 3.9e-18 94.7 91 62.6
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 5.1e-18 94.4 91 61.5
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 5.1e-18 94.4 91 60.4
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 6.6e-18 94.0 91 61.5
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 6.6e-18 94.0 91 60.4
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 6.6e-18 94.0 91 61.5
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 8.6e-18 93.6 100 54.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 8.6e-18 93.6 91 64.8
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.5e-17 92.8 91 61.5
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 3.3e-17 91.7 100 62.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.2e-16 89.7 91 59.3
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 1.6e-16 89.4 65 66.2
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.1e-16 89.0 91 64.8
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 2.1e-16 89.0 91 64.8
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.4e-15 86.3 93 54.8
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 1.8e-15 85.9 91 59.3
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 4.0e-15 84.7 92 53.3
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 5.2e-15 84.3 93 53.8
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 6.8e-15 84.0 93 53.8
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 6.8e-15 84.0 93 60.2
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 6.8e-15 84.0 93 54.8
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 8.9e-15 83.6 97 48.5
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 8.9e-15 83.6 97 60.8
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 2.6e-14 82.0 93 51.6
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 3.4e-14 81.6 96 52.1
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 7.6e-14 80.5 97 50.5
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 7.6e-14 80.5 122 45.9
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 9.9e-14 80.1 97 47.4
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 1.3e-13 79.7 59 61.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 1.3e-13 79.7 100 51.0
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 1.3e-13 79.7 100 51.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 8.4e-13 77.0 96 47.9
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 1.4e-12 76.3 65 56.9
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 1.4e-12 76.3 65 56.9
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 1.4e-12 76.3 65 56.9
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.1e-11 72.4 90 48.9
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 2.7e-11 72.0 96 44.8
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 3.5e-11 71.6 96 43.8
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 4.6e-11 71.2 91 51.6
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 5.1e-10 67.8 93 45.2
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 1.5e-09 66.2 87 47.1
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 1.9e-09 65.9 43 69.8
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 1.9e-09 65.9 86 44.2
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 1.9e-09 65.9 46 63.0
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 7.3e-09 63.9 48 64.6
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 9.6e-09 63.5 59 64.4
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.6e-08 62.8 41 68.3
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.6e-08 62.8 55 56.4
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 2.1e-08 62.4 59 64.4
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 2.4e-07 58.9 58 48.3
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 4.0e-07 58.2 43 62.8
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.2e-06 56.6 81 44.4
CBR_g45542 Chara braunii HOM05D006995 ORTHO05D008870 1.5e-06 56.2 74 48.6
TPR.G22880 Trifolium pratense HOM05D006995 ORTHO05D008870 4.4e-06 54.7 49 69.4
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 9.9e-06 53.5 30 80.0
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 9.9e-06 53.5 30 80.0


User provided reference genes

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