Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 9.6e-68 260.0 128 100.0
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.0e-48 196.8 128 75.0
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 2.2e-48 195.7 125 76.8
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 2.2e-48 195.7 128 76.6
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 8.4e-48 193.7 128 78.1
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 1.1e-47 193.4 128 75.8
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.6e-46 189.5 128 72.7
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 2.7e-46 188.7 127 74.8
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 4.6e-46 188.0 127 74.0
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 4.6e-46 188.0 128 75.0
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 7.9e-46 187.2 128 71.9
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.0e-45 186.8 123 78.9
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 3.9e-45 184.9 124 74.2
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 6.7e-45 184.1 119 73.9
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 8.7e-45 183.7 127 73.2
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 8.7e-45 183.7 128 70.3
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 1.1e-44 183.3 128 71.9
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.1e-44 183.3 128 72.7
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 1.5e-44 183.0 128 72.7
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 1.9e-44 182.6 128 69.5
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 1.9e-44 182.6 125 73.6
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 4.3e-44 181.4 125 72.0
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 4.3e-44 181.4 125 72.0
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 5.7e-44 181.0 124 71.8
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 7.4e-44 180.6 127 70.9
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 7.4e-44 180.6 127 70.9
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 9.7e-44 180.3 123 75.6
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.6e-43 179.5 127 70.1
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.6e-43 179.5 127 71.7
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 2.2e-43 179.1 123 73.2
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 2.8e-43 178.7 125 71.2
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 6.3e-43 177.6 125 70.4
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 1.1e-42 176.8 128 69.5
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 1.1e-42 176.8 120 73.3
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 1.8e-42 176.0 126 70.6
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 1.8e-42 176.0 128 71.1
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 1.8e-42 176.0 128 69.5
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 1.8e-42 176.0 122 73.0
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 2.4e-42 175.6 122 73.8
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 5.3e-42 174.5 127 69.3
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 2.6e-41 172.2 128 68.0
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 2.6e-41 172.2 122 72.1
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 4.5e-41 171.4 130 68.5
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 4.5e-41 171.4 125 71.2
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 1.0e-40 170.2 128 66.4
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 1.0e-40 170.2 128 69.5
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 1.3e-40 169.9 121 71.9
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 1.7e-40 169.5 121 71.1
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 1.7e-40 169.5 117 72.6
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 2.2e-40 169.1 125 69.6
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 2.9e-40 168.7 128 68.0
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 5.0e-40 167.9 129 67.4
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 5.0e-40 167.9 127 70.1
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 8.5e-40 167.2 128 66.4
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 8.5e-40 167.2 125 65.6
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 1.4e-39 166.4 126 67.5
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 3.2e-39 165.2 125 68.0
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 3.2e-39 165.2 127 68.5
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 4.2e-39 164.9 126 66.7
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 9.4e-39 163.7 126 66.7
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 9.4e-39 163.7 125 66.4
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 1.2e-38 163.3 125 65.6
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 1.2e-38 163.3 125 65.6
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 1.6e-38 162.9 125 65.6
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 1.6e-38 162.9 125 65.6
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 1.6e-38 162.9 126 65.1
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 2.1e-38 162.5 125 68.8
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 2.1e-38 162.5 128 65.6
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 3.6e-38 161.8 125 64.8
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 3.6e-38 161.8 125 66.4
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 4.6e-38 161.4 126 67.5
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 4.6e-38 161.4 126 65.9
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 7.9e-38 160.6 125 65.6
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 1.4e-37 159.8 128 63.3
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 1.8e-37 159.5 130 66.2
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 1.8e-37 159.5 127 66.1
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 2.3e-37 159.1 126 65.1
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 8.8e-37 157.1 120 65.8
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 8.8e-37 157.1 126 62.7
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 8.8e-37 157.1 126 64.3
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 8.8e-37 157.1 127 66.1
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 8.8e-37 157.1 127 66.1
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 1.1e-36 156.8 126 63.5
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 1.5e-36 156.4 123 68.3
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 2.5e-36 155.6 132 62.1
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 4.3e-36 154.8 124 62.9
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 5.7e-36 154.5 132 62.1
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 5.7e-36 154.5 128 63.3
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 7.4e-36 154.1 127 63.0
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 9.7e-36 153.7 130 63.8
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 9.7e-36 153.7 128 61.7
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 9.7e-36 153.7 128 64.1
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 1.3e-35 153.3 128 60.9
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 2.2e-35 152.5 126 64.3
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 2.2e-35 152.5 126 64.3
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.8e-35 151.4 128 57.0
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 6.3e-35 151.0 127 64.6
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 6.3e-35 151.0 129 63.6
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 8.2e-35 150.6 128 57.0
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 8.2e-35 150.6 130 59.2
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 1.1e-34 150.2 117 64.1
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 1.1e-34 150.2 126 60.3
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 1.4e-34 149.8 117 65.0
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 1.8e-34 149.4 128 59.4
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 3.1e-34 148.7 123 61.8
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 2.0e-33 146.0 98 72.4
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 2.6e-33 145.6 118 63.6
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 2.2e-32 142.5 119 61.3
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.5e-31 139.0 128 55.5
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 5.5e-31 137.9 129 54.3
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 3.0e-29 132.1 127 56.7
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 6.7e-29 131.0 128 53.1
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 3.3e-28 128.6 128 55.5
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 3.1e-26 122.1 128 54.7
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 1.3e-24 116.7 116 55.2
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 5.0e-24 114.8 80 68.8
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 1.5e-23 113.2 96 61.5
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 1.9e-23 112.8 97 59.8
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 1.9e-23 112.8 116 54.3
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 9.4e-23 110.5 130 49.2
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.7e-22 109.0 77 68.8
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 2.0e-17 92.8 67 67.2
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 5.9e-17 91.3 73 63.0
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 6.5e-16 87.8 117 42.7
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 1.6e-14 83.2 117 40.2
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 2.7e-14 82.4 119 39.5
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 6.1e-14 81.3 66 59.1
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 5.2e-13 78.2 76 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 1.7e-11 73.2 129 35.7
Cre12.g484700 Chlamydomonas reinhardtii HOM05D005465 ORTHO05D006612 1.1e-10 70.5 95 44.2
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 1.4e-10 70.1 74 50.0
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 1.8e-10 69.7 125 40.8
Lsat_1_v5_gn_4_50580 Lactuca sativa HOM05D005465 ORTHO05D006612 5.4e-10 68.2 49 65.3
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 7.0e-10 67.8 76 47.4
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 1.6e-09 66.6 61 55.7
Pp3c16_5680 Physcomitrium patens HOM05D005465 ORTHO05D006612 7.7e-09 64.3 112 34.8
MCO16G501 Micromonas commoda HOM05D005465 ORTHO05D006612 1.9e-07 59.7 84 36.9


User provided reference genes

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