Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 4.3e-110 401.4 205 100.0
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 2.8e-101 372.1 205 92.7
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.2e-80 303.5 205 76.1
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 6.0e-80 301.2 205 75.1
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.8e-79 299.7 205 74.6
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.1e-78 297.0 204 74.0
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.3e-78 295.0 205 73.7
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 9.6e-78 293.9 205 74.6
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 2.1e-77 292.7 205 73.2
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.8e-77 292.4 205 72.7
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 2.8e-77 292.4 205 72.7
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 4.8e-77 291.6 198 75.3
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 6.2e-77 291.2 205 72.2
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 6.2e-77 291.2 198 74.7
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.1e-76 290.4 204 73.0
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 1.4e-76 290.0 205 72.2
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 1.8e-76 289.7 205 71.7
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 3.1e-76 288.9 206 73.8
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 3.1e-76 288.9 206 72.8
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 4.0e-76 288.5 205 73.2
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 6.9e-76 287.7 206 72.8
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 9.0e-76 287.3 197 74.6
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.2e-75 287.0 203 72.4
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 2.6e-75 285.8 205 73.2
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.6e-75 285.8 205 71.7
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 3.4e-75 285.4 206 72.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 3.4e-75 285.4 198 74.2
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 1.7e-74 283.1 197 74.1
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 2.9e-74 282.3 205 69.3
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.9e-74 282.3 205 72.7
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 2.9e-74 282.3 200 72.5
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 3.8e-74 282.0 222 68.9
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 6.4e-74 281.2 205 71.2
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.1e-73 280.4 191 73.8
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.1e-73 280.4 205 72.7
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.1e-73 280.4 198 74.2
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.4e-73 280.0 205 71.7
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.9e-73 279.6 190 76.3
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 2.4e-73 279.3 199 74.4
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 3.2e-73 278.9 199 70.4
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 3.2e-73 278.9 197 74.6
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 4.2e-73 278.5 205 72.7
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 4.2e-73 278.5 205 71.2
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 4.2e-73 278.5 205 72.2
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 7.1e-73 277.7 197 74.6
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 7.1e-73 277.7 186 76.3
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 9.3e-73 277.3 205 69.8
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.6e-72 276.6 205 71.2
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.6e-72 276.6 205 71.2
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 6.0e-72 274.6 199 71.4
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 7.9e-72 274.2 205 70.7
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.3e-71 273.5 198 69.2
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.8e-71 273.1 204 68.6
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.8e-71 273.1 204 68.6
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 3.9e-71 271.9 205 69.3
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 8.7e-71 270.8 199 70.9
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 3.3e-70 268.9 186 72.6
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 9.6e-70 267.3 196 69.4
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 9.6e-70 267.3 200 70.5
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 9.6e-70 267.3 200 70.0
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 1.3e-69 266.9 205 68.3
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 1.3e-69 266.9 203 70.0
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 2.1e-69 266.2 202 68.3
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.8e-69 265.0 226 65.5
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 4.8e-69 265.0 191 70.7
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 8.1e-69 264.2 205 67.3
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 1.4e-68 263.5 205 68.3
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.4e-68 263.5 223 63.7
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.4e-68 263.5 199 68.3
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.4e-68 262.7 205 66.3
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 2.4e-68 262.7 188 71.8
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 3.1e-68 262.3 205 66.8
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 5.3e-68 261.5 205 66.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 6.9e-68 261.2 189 71.4
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 6.9e-68 261.2 205 66.3
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 9.0e-68 260.8 204 65.7
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.6e-67 259.2 205 65.9
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 3.4e-67 258.8 205 65.9
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 3.4e-67 258.8 205 65.9
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 3.4e-67 258.8 205 65.9
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 3.4e-67 258.8 205 65.4
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 3.4e-67 258.8 174 77.0
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 4.5e-67 258.5 198 67.7
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 5.8e-67 258.1 199 68.8
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 5.8e-67 258.1 205 65.4
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 5.8e-67 258.1 191 69.6
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 7.6e-67 257.7 198 67.2
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.2e-66 256.1 204 66.7
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 4.9e-66 255.0 200 65.5
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 6.5e-66 254.6 189 69.8
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 8.4e-66 254.2 191 68.1
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-65 253.1 196 68.4
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 7.1e-65 251.1 191 67.5
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.1e-62 243.8 229 59.0
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 4.3e-62 241.9 200 64.5
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.1e-61 239.6 316 46.8
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 6.9e-60 234.6 161 75.8
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 6.5e-58 228.0 239 54.4
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 4.3e-54 215.3 166 66.9
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 1.3e-53 213.8 156 71.8
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.1e-52 210.7 203 56.7
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 4.6e-48 195.3 115 84.3
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.8e-44 183.3 132 69.7
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 1.8e-44 183.3 152 63.8
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.8e-44 183.3 126 73.8
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.1e-44 182.6 116 81.0
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 2.0e-43 179.9 106 82.1
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 7.7e-43 177.9 120 73.3
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 6.5e-42 174.9 135 66.7
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.3e-39 166.4 135 64.4
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 8.8e-39 164.5 108 76.9
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 6.7e-31 138.3 148 54.1
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 2.6e-30 136.3 192 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.4e-28 130.6 149 42.3
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.4e-28 130.6 185 41.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 2.1e-24 116.7 138 44.9
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.0e-23 114.4 93 61.3
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 8.8e-23 111.3 184 38.0
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 2.2e-21 106.7 135 45.9
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 2.4e-20 103.2 231 32.5
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 7.2e-17 91.7 176 36.9
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 4.0e-07 59.3 35 77.1
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 5.2e-07 58.9 48 62.5
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 1.5e-06 57.4 77 42.9
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.5e-06 57.4 33 81.8
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 4.4e-06 55.8 48 58.3


User provided reference genes

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