Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 6.6e-113 410.6 193 100.0
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 3.2e-107 391.7 193 97.4
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.1e-88 330.1 190 78.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 5.7e-88 327.8 193 75.6
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-87 326.6 179 78.8
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.6e-87 326.2 186 78.5
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 6.2e-87 324.3 189 76.2
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 8.2e-87 323.9 179 77.1
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.2e-87 323.9 179 78.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.1e-86 323.6 183 77.6
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-86 323.6 179 78.2
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-86 323.2 176 79.0
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-86 321.6 179 77.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 6.9e-86 320.9 198 73.2
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 9.0e-86 320.5 191 73.8
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.2e-85 320.1 188 75.0
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.2e-85 320.1 176 79.5
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.6e-85 318.9 186 74.7
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 2.6e-85 318.9 180 77.8
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 3.4e-85 318.5 180 76.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 3.4e-85 318.5 176 79.5
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 4.5e-85 318.2 180 76.7
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 5.8e-85 317.8 190 73.2
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.0e-84 317.0 189 73.5
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.3e-84 316.6 182 75.3
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.2e-84 315.8 183 75.4
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.9e-84 315.5 186 76.9
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 3.8e-84 315.1 181 76.2
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 4.9e-84 314.7 178 75.8
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 6.5e-84 314.3 178 75.8
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 6.5e-84 314.3 178 76.4
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 6.5e-84 314.3 178 75.8
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.1e-83 313.5 182 73.6
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-83 313.2 178 74.7
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.4e-83 313.2 179 74.9
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.4e-83 313.2 179 74.9
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.4e-83 313.2 187 74.3
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.5e-83 312.4 182 73.1
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 3.2e-83 312.0 178 75.8
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 4.2e-83 311.6 178 74.7
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.5e-83 311.2 178 75.3
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.5e-83 311.2 178 75.3
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 9.3e-83 310.5 182 73.1
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 9.3e-83 310.5 182 73.1
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 9.3e-83 310.5 189 74.6
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.2e-82 310.1 178 74.2
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.2e-82 310.1 182 72.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.2e-82 310.1 178 74.2
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.2e-82 310.1 191 73.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.2e-82 310.1 176 75.0
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.6e-82 309.7 179 73.7
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.6e-82 309.7 189 75.1
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.6e-82 309.7 189 76.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.6e-82 309.7 187 71.1
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.6e-82 309.7 176 76.1
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.1e-82 309.3 196 71.9
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 2.7e-82 308.9 191 72.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 3.5e-82 308.5 178 73.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 3.5e-82 308.5 178 73.6
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 4.6e-82 308.1 189 74.6
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 4.6e-82 308.1 187 73.8
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.0e-81 307.0 186 73.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.3e-81 306.6 178 72.5
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.3e-81 306.6 179 76.0
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.8e-81 306.2 178 72.5
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.8e-81 306.2 182 72.0
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 2.3e-81 305.8 175 74.3
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 3.0e-81 305.4 178 72.5
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 5.1e-81 304.7 186 72.6
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 6.7e-81 304.3 180 73.3
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 6.7e-81 304.3 176 72.7
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.1e-80 303.5 182 72.5
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.5e-80 303.1 188 73.9
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 2.5e-80 302.4 180 71.7
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 7.4e-80 300.8 174 73.6
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 7.4e-80 300.8 183 71.6
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 7.4e-80 300.8 183 71.6
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.3e-79 300.1 179 71.5
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.2e-79 299.3 207 64.7
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 3.7e-79 298.5 182 72.5
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.8e-79 298.1 179 71.5
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.8e-79 298.1 179 71.5
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 6.3e-79 297.7 179 70.4
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 8.2e-79 297.4 179 71.5
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-77 292.7 164 77.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.7e-77 290.8 187 69.5
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.9e-76 288.9 177 69.5
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.4e-75 286.6 208 63.0
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-75 286.2 200 63.5
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 4.2e-75 285.0 189 67.2
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.7e-74 282.3 191 64.4
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.7e-74 282.3 191 64.4
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.6e-74 282.0 172 71.5
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.8e-73 279.6 151 80.1
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.5e-72 275.8 221 57.5
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-72 275.4 221 57.0
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.7e-71 271.9 182 64.3
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.4e-70 270.0 158 75.9
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.4e-70 269.2 169 70.4
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 3.1e-70 268.9 158 72.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.1e-70 268.5 175 68.0
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.1e-70 268.5 175 68.0
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.2e-69 266.9 190 63.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.6e-69 265.8 155 75.5
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 4.5e-69 265.0 164 70.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.0e-68 263.8 184 66.3
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 8.5e-68 260.8 188 65.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 7.2e-67 257.7 158 67.7
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.1e-66 256.1 173 63.6
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.1e-66 256.1 169 66.3
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 1.0e-65 253.8 189 59.3
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.4e-65 253.4 157 66.9
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.6e-64 249.2 147 70.7
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 5.7e-64 248.1 205 55.1
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.1e-62 243.8 275 45.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.4e-62 242.7 145 69.7
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 7.7e-61 237.7 148 66.9
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.5e-59 233.4 140 70.0
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 7.2e-59 231.1 187 57.2
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.4e-56 221.9 120 78.3
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.1e-54 217.2 176 52.3
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.1e-54 217.2 178 53.4
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.0e-53 213.0 176 58.5
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.0e-53 213.0 179 55.9
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 4.7e-50 201.8 191 53.4
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 5.3e-46 188.3 199 47.7
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.0e-45 186.4 173 45.1
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.0e-45 186.4 173 45.1
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.2e-44 183.0 189 43.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.9e-43 179.9 92 83.7
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.1e-42 174.9 90 82.2
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.0e-42 174.5 143 58.0
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.0e-41 174.1 193 50.8
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 5.7e-40 168.3 121 58.7
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.4e-38 163.7 206 36.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 3.8e-36 155.6 142 45.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 8.6e-36 154.5 162 46.3
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-35 153.7 148 52.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.5e-35 153.7 180 37.2
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.9e-35 153.3 177 37.9
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.0e-33 147.5 93 68.8
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.7e-29 132.9 92 65.2
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.1e-09 67.8 38 73.7
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 4.0e-09 65.9 41 70.7
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.9e-06 57.0 41 63.4


User provided reference genes

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