Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1935.6 985 100.0
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1475.7 985 74.3
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1472.6 986 73.5
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1471.4 985 74.6
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1471.1 978 74.5
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1463.7 985 73.5
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1457.2 978 73.7
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1452.6 985 72.8
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1452.2 985 72.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1451.8 985 72.9
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1448.0 985 72.6
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1447.6 975 72.4
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 985 73.0
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1439.9 985 70.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1439.9 985 72.1
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1434.5 954 73.3
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 985 71.8
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 985 71.9
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1431.4 985 71.8
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1429.8 983 71.7
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1429.5 986 72.4
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1428.3 983 71.9
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1427.5 984 72.4
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 986 72.0
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 978 71.1
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1426.8 984 71.6
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1421.8 993 70.6
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1420.6 985 70.3
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1420.6 985 71.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1420.2 985 70.2
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1417.5 985 70.4
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1416.4 985 70.3
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1416.0 985 70.2
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1414.4 980 71.7
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1414.4 985 71.0
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1411.7 985 69.8
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1409.8 984 70.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1409.4 986 69.6
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 980 71.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 980 71.5
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1407.9 980 71.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1407.9 985 69.9
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1402.5 986 69.8
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 986 69.7
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1401.0 986 69.4
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1398.6 985 69.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1397.9 985 68.1
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1397.1 980 69.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1396.7 1009 69.5
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1395.9 985 69.1
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1394.8 985 69.7
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1387.1 978 69.5
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1386.7 973 69.2
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1386.7 978 69.4
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1386.3 985 69.2
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 988 69.0
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1377.5 985 68.1
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1374.8 991 70.1
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1374.8 985 67.6
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 985 66.9
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1372.1 985 67.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 978 68.8
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 985 67.7
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1366.7 985 67.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1365.9 985 68.6
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1365.9 980 67.9
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1365.1 985 66.2
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 988 66.0
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1360.5 991 70.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1358.2 1000 68.1
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1354.7 985 65.7
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1352.0 984 68.1
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1351.7 980 66.7
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1350.1 985 68.2
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1348.6 985 67.5
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1348.2 986 67.0
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1347.8 980 66.4
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 978 66.8
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1347.0 978 67.6
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1346.3 985 67.6
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1346.3 985 68.5
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 985 67.5
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 984 66.8
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 985 67.8
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1344.3 978 66.4
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1344.3 985 67.9
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 1078 63.5
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1342.4 985 67.2
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1341.3 985 67.1
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1339.3 987 67.1
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1335.1 1000 66.6
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1334.3 976 67.1
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1332.4 985 65.8
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1330.9 1080 61.7
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1330.5 955 67.7
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1330.1 985 67.1
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1329.7 1016 65.3
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1325.5 978 67.1
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1321.6 953 66.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1319.3 986 66.6
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1318.1 986 66.6
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1318.1 1005 65.8
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1316.6 985 65.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1314.3 989 65.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1303.1 900 71.0
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1302.7 1012 65.1
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1273.5 987 63.6
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 1001 64.5
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1261.5 985 63.4
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1260.0 985 62.9
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1259.6 985 63.1
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1255.7 968 65.0
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1240.7 985 61.6
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1226.8 981 60.6
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1224.5 985 63.4
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1220.3 985 61.6
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1218.4 986 63.1
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1210.7 898 65.8
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1206.0 981 59.8
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1204.9 847 68.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1178.7 1014 59.3
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1114.0 879 62.8
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1106.7 848 63.6
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1083.6 974 56.9
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.6e-306 1055.4 810 64.2
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.3e-292 1010.0 991 52.1
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 3.6e-287 991.9 998 50.3
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 7.2e-264 914.4 659 67.8
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.0e-255 884.4 541 79.1
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.5e-245 853.6 953 47.1
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 6.8e-238 828.2 689 58.2
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 9.2e-235 817.8 658 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 6.6e-209 731.9 887 42.7
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.4e-203 712.2 530 66.6
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.7e-172 610.9 806 44.5
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.4e-165 586.6 362 78.2
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 3.6e-154 550.1 917 38.7
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.0e-141 507.7 296 87.5
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.2e-140 504.2 417 60.0
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 4.2e-139 500.0 296 84.1
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 8.0e-130 469.2 829 35.8
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.0e-129 466.8 282 81.9
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-117 427.6 256 80.9
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 2.1e-114 417.9 1054 30.4
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 4.0e-105 387.1 664 41.1
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.9e-102 378.3 1010 30.3
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.0e-100 372.5 327 58.4
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.0e-92 344.4 378 47.1
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 3.5e-77 294.3 429 39.6
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.3e-76 291.6 359 45.7
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.9e-75 288.5 318 45.6
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.8e-66 258.1 255 50.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.9e-59 235.3 251 48.6
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 5.9e-56 223.8 147 78.9
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 4.2e-54 217.6 129 79.8
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.6e-53 214.5 185 57.3
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 6.1e-53 213.8 125 81.6
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.6e-48 198.4 1042 22.8
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 5.9e-48 197.2 125 77.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.1e-43 183.0 140 61.4
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.1e-41 176.4 105 81.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 4.1e-41 174.5 200 53.5
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 3.6e-37 161.4 101 72.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 8.0e-37 160.2 101 72.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 8.0e-37 160.2 101 72.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 2.0e-32 145.6 85 87.1
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 6.8e-20 104.0 70 72.9
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.8e-20 103.6 121 53.7
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 8.8e-20 103.6 121 53.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.4e-19 101.7 82 54.9
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 9.8e-19 100.1 63 77.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.7e-18 99.4 62 74.2
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 6.3e-18 97.4 121 43.8
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 1.1e-17 96.7 82 54.9
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 4.1e-17 94.7 73 68.5
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.6e-16 92.8 171 35.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.1e-14 86.7 53 73.6
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 9.5e-14 83.6 137 38.7
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.2e-13 83.2 60 66.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 6.8e-12 77.4 60 63.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.6e-11 75.5 60 61.7
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 2.6e-11 75.5 58 58.6
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 2.0e-08 65.9 117 32.5
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 7.8e-08 63.9 122 31.1
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 5.0e-07 61.2 37 78.4


User provided reference genes

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