Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.2e-52 209.5 104 100.0
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 6.4e-38 160.6 102 77.5
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.2e-36 156.4 102 75.5
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.6e-36 154.5 98 74.5
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 6.0e-36 154.1 98 73.5
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.1e-35 151.0 97 71.1
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.7e-35 150.6 98 69.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 4.3e-34 147.9 97 70.1
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.3e-34 147.9 98 72.4
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 4.3e-34 147.9 98 68.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.4e-34 147.1 98 69.4
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.8e-33 145.2 98 68.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 4.8e-33 144.4 98 68.4
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-32 143.3 98 70.4
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-32 143.3 98 70.4
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-32 143.3 98 70.4
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.1e-32 143.3 98 70.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-32 143.3 98 69.4
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.1e-32 143.3 98 69.4
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.4e-32 142.9 98 69.4
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.4e-32 142.9 98 69.4
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.8e-32 142.5 98 68.4
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 4.0e-32 141.4 99 67.7
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.3e-32 141.0 97 69.1
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 5.3e-32 141.0 97 69.1
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 5.3e-32 141.0 101 69.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 6.9e-32 140.6 97 67.0
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 6.9e-32 140.6 98 65.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 6.9e-32 140.6 101 69.3
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 9.0e-32 140.2 99 66.7
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 9.0e-32 140.2 100 65.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 9.0e-32 140.2 98 68.4
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.2e-31 139.8 96 67.7
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 2.0e-31 139.0 107 68.2
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 2.0e-31 139.0 97 63.9
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.6e-31 138.7 92 72.8
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 3.4e-31 138.3 98 67.3
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 3.4e-31 138.3 98 68.4
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 3.4e-31 138.3 98 67.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 3.4e-31 138.3 98 67.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 3.4e-31 138.3 98 67.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 5.8e-31 137.5 98 66.3
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 7.6e-31 137.1 98 66.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 7.6e-31 137.1 102 64.7
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.6e-31 137.1 96 67.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.3e-30 136.3 98 66.3
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.2e-30 135.6 98 66.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.2e-30 135.6 98 65.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.2e-30 135.6 98 67.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 2.2e-30 135.6 96 66.7
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 3.8e-30 134.8 90 72.2
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 6.5e-30 134.0 92 71.7
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 8.4e-30 133.7 98 65.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 8.4e-30 133.7 97 68.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 8.4e-30 133.7 95 64.2
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 8.4e-30 133.7 97 66.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.1e-29 133.3 96 63.5
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.1e-29 133.3 97 63.9
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.5e-29 132.1 107 61.7
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 4.2e-29 131.3 104 62.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 5.5e-29 131.0 98 63.3
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 7.1e-29 130.6 96 61.5
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 7.1e-29 130.6 96 63.5
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.3e-29 130.2 97 64.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 9.3e-29 130.2 97 63.9
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.2e-28 129.8 101 62.4
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.2e-28 129.8 98 64.3
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 6.0e-28 127.5 97 63.9
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.3e-27 125.6 97 62.9
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 3.0e-27 125.2 98 60.2
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 5.1e-27 124.4 98 64.3
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 5.1e-27 124.4 104 58.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 6.7e-27 124.0 98 63.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 6.7e-27 124.0 98 63.3
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 8.7e-27 123.6 96 59.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 8.7e-27 123.6 98 61.2
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 8.7e-27 123.6 98 61.2
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 8.7e-27 123.6 98 59.2
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.5e-26 122.9 104 57.7
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.9e-26 122.5 90 64.4
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 5.7e-26 120.9 102 61.8
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 7.4e-26 120.6 95 58.9
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.8e-25 118.6 97 59.8
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.8e-24 115.9 92 64.1
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 9.0e-24 113.6 92 58.7
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 5.8e-23 110.9 86 61.6
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 5.8e-23 110.9 97 58.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.9e-22 108.6 103 55.3
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 3.8e-22 108.2 98 59.2
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.1e-21 106.7 87 60.9
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.5e-21 105.5 87 58.6
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.5e-21 104.4 86 59.3
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 9.3e-21 103.6 76 63.2
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.2e-20 103.2 87 57.5
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.5e-18 96.3 99 51.5
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.5e-18 95.5 96 53.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.2e-17 92.4 77 57.1
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 2.8e-17 92.0 96 53.1
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.3e-17 90.9 73 58.9
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 8.2e-17 90.5 83 53.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.4e-16 89.0 83 53.0
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.4e-16 89.0 81 50.6
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.4e-16 89.0 81 50.6
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.2e-15 86.7 85 52.9
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 5.9e-15 84.3 87 52.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.9e-13 79.3 75 50.7
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.6e-12 76.3 75 46.7
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.1e-12 75.9 63 54.0
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.1e-12 75.9 70 51.4
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.1e-12 75.9 89 49.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.6e-12 74.7 70 50.0
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.6e-12 74.7 70 50.0
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 4.6e-12 74.7 69 56.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 6.1e-12 74.3 72 50.0
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 6.1e-12 74.3 80 47.5
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.3e-11 72.4 79 44.3
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.3e-11 72.4 70 48.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.0e-11 72.0 81 43.2
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.1e-10 70.1 72 50.0
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.1e-10 70.1 80 50.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.1e-10 70.1 80 50.0
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.1e-10 70.1 67 50.7
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.1e-10 70.1 69 49.3
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.5e-10 69.7 66 53.0
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.0e-10 69.3 66 50.0
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.5e-10 68.9 96 42.7
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.5e-10 68.9 77 48.1
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.3e-10 68.6 66 50.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.3e-10 68.2 86 44.2
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.3e-10 68.2 86 44.2
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.3e-10 68.2 86 44.2
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.7e-10 67.8 83 47.0
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 5.7e-10 67.8 69 47.8
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 7.4e-10 67.4 66 50.0
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 7.4e-10 67.4 64 50.0
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.4e-10 67.4 66 51.5
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 7.4e-10 67.4 64 53.1
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 9.7e-10 67.0 85 41.2
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 9.7e-10 67.0 63 55.6
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.7e-09 66.2 62 51.6
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.2e-09 65.9 68 47.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.8e-09 65.5 69 46.4
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.8e-09 65.5 69 46.4
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 3.7e-09 65.1 92 42.4
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.8e-09 64.7 66 48.5
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.1e-08 63.5 62 50.0
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.4e-08 63.2 59 45.8
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.8e-08 62.8 63 54.0
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.8e-08 62.8 63 54.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.8e-08 62.8 63 54.0
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.8e-08 62.8 63 54.0
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.8e-08 62.8 63 54.0
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.4e-08 62.4 64 51.6
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.4e-08 62.4 63 55.6
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.4e-08 62.4 77 42.9
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 3.1e-08 62.0 67 46.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.1e-08 61.6 62 46.8
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.1e-08 61.6 59 44.1
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.2e-07 60.1 47 59.6
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.5e-07 59.7 96 42.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.5e-07 59.7 79 44.3
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.4e-07 58.5 66 42.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 4.5e-07 58.2 63 50.8
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 7.7e-07 57.4 40 60.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.0e-06 57.0 63 49.2
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.0e-06 57.0 87 37.9
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.3e-06 56.6 63 49.2
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.7e-06 56.2 64 48.4
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.2e-06 55.8 63 49.2
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.2e-06 55.8 63 49.2
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 2.9e-06 55.5 63 49.2
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 2.9e-06 55.5 63 49.2
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 2.9e-06 55.5 63 49.2
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.9e-06 55.5 81 39.5
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 3.8e-06 55.1 63 47.6
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 3.8e-06 55.1 63 47.6
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 3.8e-06 55.1 63 49.2
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 3.8e-06 55.1 63 47.6
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 3.8e-06 55.1 63 47.6
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 3.8e-06 55.1 63 49.2
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 5.0e-06 54.7 50 54.0
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 5.0e-06 54.7 63 47.6
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 49.2
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 6.5e-06 54.3 75 38.7
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 49.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 8.5e-06 53.9 63 47.6


User provided reference genes

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