Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 1.2e-264 916.0 468 100.0
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 4.3e-142 508.8 466 58.4
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.2e-139 500.7 470 56.8
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 6.5e-138 495.0 479 55.5
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 3.3e-134 482.6 503 53.1
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 2.2e-133 479.9 474 55.1
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 2.6e-131 473.0 502 52.8
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 3.4e-131 472.6 462 55.6
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.7e-130 470.3 465 56.6
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 8.5e-130 468.0 467 54.4
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.1e-129 467.6 465 55.5
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 1.1e-129 467.6 503 51.7
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.1e-129 467.6 503 52.1
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.4e-129 467.2 504 51.8
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.4e-129 467.2 497 51.5
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 2.1e-128 463.4 500 51.6
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 2.7e-128 463.0 503 51.7
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 2.7e-128 463.0 485 55.1
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.4e-127 460.7 465 53.3
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 5.1e-127 458.8 472 54.2
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.1e-126 457.6 497 52.5
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 2.0e-126 456.8 463 54.0
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.6e-126 456.4 500 51.0
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 9.7e-126 454.5 477 55.8
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.7e-125 453.8 499 50.5
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.1e-124 451.1 462 52.8
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.8e-124 450.3 467 54.8
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 3.1e-124 449.5 467 54.6
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 4.1e-124 449.1 465 52.3
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 4.1e-124 449.1 467 54.6
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 5.3e-124 448.7 472 52.5
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 2.6e-123 446.4 482 51.2
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 5.9e-123 445.3 469 54.2
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.7e-122 443.7 472 52.1
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 3.8e-122 442.6 467 52.9
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 6.5e-122 441.8 459 55.3
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 1.5e-121 440.7 506 52.2
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.0e-119 434.5 475 50.7
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.4e-119 434.1 472 51.1
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.0e-119 433.0 464 53.4
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 5.2e-119 432.2 463 53.6
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 6.7e-119 431.8 464 53.2
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 2.0e-118 430.3 467 51.0
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 5.7e-118 428.7 464 53.2
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 5.3e-116 422.2 468 50.0
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.2e-115 421.0 477 50.1
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 2.6e-115 419.9 461 49.7
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 4.5e-115 419.1 464 50.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 1.3e-114 417.5 473 52.4
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.2e-114 416.8 450 48.9
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 4.2e-113 412.5 470 51.1
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 2.7e-112 409.8 473 51.0
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 2.7e-112 409.8 464 51.7
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.6e-112 409.5 468 48.1
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 1.0e-111 407.9 406 53.9
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.8e-111 407.1 487 47.6
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 2.3e-111 406.8 474 50.4
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 4.0e-111 406.0 471 47.8
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 6.8e-111 405.2 472 49.8
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.0e-110 403.7 472 48.3
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 2.6e-110 403.3 482 46.7
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 4.4e-110 402.5 472 50.6
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 4.4e-110 402.5 475 47.6
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 7.5e-110 401.7 463 49.2
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.3e-109 401.0 467 50.7
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.7e-109 400.6 465 48.2
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 6.3e-109 398.7 535 46.2
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 2.4e-108 396.7 476 47.3
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 2.4e-108 396.7 466 50.0
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 5.4e-108 395.6 468 47.4
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 5.4e-108 395.6 422 50.2
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 4.5e-107 392.5 466 50.0
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 2.9e-106 389.8 474 48.3
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.9e-106 389.8 465 49.7
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.5e-105 386.7 405 49.9
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 6.1e-104 382.1 467 49.5
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 1.0e-103 381.3 477 48.8
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 2.6e-102 376.7 466 48.9
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 9.8e-102 374.8 490 48.0
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 1.7e-101 374.0 471 45.6
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 6.3e-101 372.1 491 44.6
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 8.3e-93 345.1 459 46.6
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 1.4e-92 344.4 394 50.5
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 4.4e-86 322.8 467 44.1
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 5.8e-86 322.4 341 53.1
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 8.3e-85 318.5 464 42.0
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 7.0e-84 315.5 418 48.1
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 9.2e-84 315.1 378 50.5
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 1.6e-83 314.3 396 45.5
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 5.2e-79 299.3 463 43.0
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 1.5e-73 281.2 470 40.9
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.9e-73 280.8 463 38.0
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.1e-71 273.5 347 46.1
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.7e-69 267.7 459 40.1
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.6e-64 250.0 503 32.6
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 8.9e-63 245.4 200 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 2.6e-62 243.8 548 32.3
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 2.9e-61 240.4 171 69.0
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 3.2e-60 236.9 172 65.1
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 6.0e-59 232.6 319 47.0
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 8.7e-58 228.8 265 50.9
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.1e-55 220.3 284 46.1
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.9e-53 213.8 518 30.1
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 4.2e-52 209.9 456 32.0
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 5.4e-52 209.5 245 49.4
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 6.2e-48 196.1 262 40.8
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.6e-46 190.7 212 49.1
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 3.4e-46 190.3 123 74.8
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 5.1e-42 176.4 116 78.4
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.8e-40 170.6 123 69.1
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 6.3e-32 142.9 171 42.7
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.3e-26 125.2 127 52.8
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.3e-24 116.3 69 78.3
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.8e-23 114.8 97 59.8
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 1.2e-22 112.1 69 78.3
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 4.5e-14 83.6 157 33.8
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.1e-12 79.0 45 80.0
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 1.6e-11 75.1 55 67.3
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.0e-10 72.4 171 33.9
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.4e-10 72.0 84 47.6


User provided reference genes

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