Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 1.6e-57 226.9 205 100.0
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 5.1e-32 142.1 205 77.1
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.1e-29 132.9 110 80.0
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 3.1e-21 106.3 74 70.3
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.1e-21 106.3 74 70.3
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.2e-20 104.4 74 68.9
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 5.9e-20 102.1 74 66.2
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.3e-19 100.9 71 70.4
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 1.7e-19 100.5 70 68.6
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 3.8e-19 99.4 75 66.7
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.9e-18 97.1 74 62.2
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.5e-18 96.7 74 60.8
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 3.2e-18 96.3 74 64.9
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 4.2e-18 95.9 74 64.9
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 7.2e-18 95.1 71 64.8
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 7.2e-18 95.1 74 60.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 9.3e-18 94.7 74 56.8
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 4.6e-17 92.4 74 56.8
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 6.1e-17 92.0 74 59.5
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 6.1e-17 92.0 74 59.5
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 7.9e-17 91.7 74 56.8
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 7.9e-17 91.7 73 57.5
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.8e-16 90.5 74 62.2
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.3e-16 90.1 64 67.2
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 3.0e-16 89.7 69 63.8
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 3.9e-16 89.4 65 63.1
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 3.9e-16 89.4 74 54.1
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 5.1e-16 89.0 68 61.8
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 5.1e-16 89.0 74 60.8
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 6.7e-16 88.6 74 62.2
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 6.7e-16 88.6 71 62.0
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 8.7e-16 88.2 64 64.1
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.1e-15 87.8 67 61.2
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.5e-15 87.4 74 55.4
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.5e-15 87.4 67 61.2
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 7.4e-15 85.1 74 54.1
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 9.7e-15 84.7 74 56.8
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 9.7e-15 84.7 64 60.9
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 9.7e-15 84.7 64 60.9
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.6e-14 84.0 76 57.9
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.2e-14 83.6 74 54.1
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.2e-14 83.6 74 50.0
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.8e-14 83.2 74 56.8
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 3.7e-14 82.8 108 42.6
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 3.7e-14 82.8 108 42.6
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 4.8e-14 82.4 74 55.4
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-13 80.9 75 78.7
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.8e-13 80.5 74 54.1
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 2.4e-13 80.1 74 45.9
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.4e-13 80.1 64 54.7
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.1e-13 79.7 53 69.8
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 5.3e-13 79.0 71 53.5
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 6.9e-13 78.6 70 57.1
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 6.9e-13 78.6 66 57.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 6.9e-13 78.6 66 57.6
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 9.0e-13 78.2 74 47.3
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 9.0e-13 78.2 74 47.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 9.0e-13 78.2 74 47.3
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 9.0e-13 78.2 74 47.3
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 9.0e-13 78.2 104 42.3
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.2e-12 77.8 74 51.4
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.6e-12 76.6 71 54.9
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 2.6e-12 76.6 73 52.1
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.4e-12 76.3 74 51.4
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 7.7e-12 75.1 67 58.2
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.0e-11 74.7 74 52.7
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.0e-11 74.7 63 58.7
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 1.0e-11 74.7 69 55.1
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 1.0e-11 74.7 70 51.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.3e-11 74.3 106 38.7
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.3e-11 74.3 74 44.6
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.3e-11 74.3 70 54.3
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.7e-11 73.9 61 55.7
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.2e-11 73.6 74 43.2
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.4e-10 70.9 73 45.2
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.9e-10 70.5 72 51.4
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 3.2e-10 69.7 61 54.1
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 3.2e-10 69.7 74 47.3
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 4.2e-10 69.3 63 55.6
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 4.2e-10 69.3 50 62.0
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.2e-10 69.3 76 50.0
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 4.2e-10 69.3 70 50.0
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 5.5e-10 68.9 66 50.0
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 7.2e-10 68.6 61 54.1
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 1.6e-09 67.4 63 49.2
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.6e-09 67.4 61 54.1
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.1e-09 67.0 59 52.5
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 3.6e-09 66.2 68 51.5
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.9e-09 65.1 74 41.9
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 7.9e-09 65.1 76 46.1
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 7.9e-09 65.1 74 48.6
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.0e-08 64.7 38 76.3
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.0e-08 64.7 68 51.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.4e-08 64.3 71 46.5
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.8e-08 63.9 74 50.0
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.3e-08 63.5 74 43.2
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 3.0e-08 63.2 71 42.3
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.0e-08 63.2 55 56.4
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 3.9e-08 62.8 63 50.8
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.1e-08 62.4 72 48.6
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 6.7e-08 62.0 77 46.8
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.5e-07 60.8 63 50.8
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 2.0e-07 60.5 73 41.1
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.0e-07 60.5 72 41.7
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 2.0e-07 60.5 71 46.5
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 4.4e-07 59.3 53 56.6
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.4e-07 59.3 73 50.7
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.4e-07 58.5 71 45.1
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 9.7e-07 58.2 72 41.7
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.3e-06 57.8 38 65.8
SalBow6G1670 Salvia bowleyana HOM05D003899 ORTHO05D003655 1.3e-06 57.8 59 52.5
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.3e-06 57.8 74 47.3
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.3e-06 57.8 77 49.4
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.3e-06 57.8 38 68.4
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 1.7e-06 57.4 73 38.4
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.7e-06 57.4 71 39.4
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.2e-06 57.0 75 50.7
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 2.2e-06 57.0 75 49.3
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 2.8e-06 56.6 37 62.2
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 3.7e-06 56.2 72 41.7
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 3.7e-06 56.2 48 50.0
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 4.8e-06 55.8 38 65.8
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.8e-06 55.8 36 66.7
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 6.3e-06 55.5 36 63.9
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.3e-06 55.5 59 54.2


User provided reference genes

Program Settings