Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.8e-246 854.4 427 100.0
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.1e-155 552.0 339 80.2
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.0e-153 547.4 319 82.1
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 1.3e-153 547.0 325 83.1
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-152 543.9 323 81.7
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 2.5e-152 542.7 338 78.1
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 5.5e-152 541.6 376 73.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.1e-151 539.7 323 80.2
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 4.7e-151 538.5 323 81.1
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.1e-151 538.1 323 79.9
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.4e-150 537.0 322 79.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 3.9e-150 535.4 313 81.8
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.1e-149 533.9 292 86.0
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.3e-149 532.3 385 70.4
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 4.4e-149 531.9 325 79.7
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 7.4e-149 531.2 389 69.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 7.4e-149 531.2 322 80.7
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.7e-149 530.8 292 85.3
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 9.7e-149 530.8 317 82.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.7e-148 528.9 292 84.9
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 3.7e-148 528.9 298 84.6
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 4.8e-148 528.5 335 77.9
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.8e-148 528.5 390 69.2
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 6.3e-148 528.1 323 78.3
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 6.3e-148 528.1 316 79.4
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.2e-148 527.7 324 77.5
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 8.2e-148 527.7 319 79.0
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.1e-147 527.3 346 74.3
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.4e-147 526.9 382 71.5
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.4e-147 526.9 323 78.0
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.4e-147 526.2 313 82.4
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.4e-147 526.2 323 77.7
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.1e-147 525.8 324 77.8
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 5.3e-147 525.0 391 68.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 5.3e-147 525.0 365 73.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 5.3e-147 525.0 311 80.7
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 7.0e-147 524.6 396 66.7
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 9.1e-147 524.2 319 78.4
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 9.1e-147 524.2 338 74.3
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.5e-146 522.3 405 65.7
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 3.5e-146 522.3 340 75.0
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 7.7e-146 521.2 319 79.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.2e-145 519.6 329 76.3
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.9e-145 519.2 293 84.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 6.5e-145 518.1 357 71.7
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 6.5e-145 518.1 318 77.4
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 6.5e-145 518.1 335 76.4
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.5e-144 516.9 386 67.4
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.9e-144 516.5 329 74.5
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 3.2e-144 515.8 293 83.3
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.4e-142 510.4 319 79.0
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.6e-141 506.1 321 76.3
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 4.4e-141 505.4 321 75.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 4.4e-141 505.4 321 75.7
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 5.7e-141 505.0 314 79.3
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 7.5e-141 504.6 341 75.7
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 6.3e-140 501.5 321 75.7
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 8.2e-140 501.1 322 74.8
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.8e-139 500.0 323 74.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.8e-139 500.0 293 80.5
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 7.0e-139 498.0 276 84.1
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 9.1e-139 497.7 293 80.5
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.5e-138 495.7 337 72.1
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 4.5e-138 495.4 307 77.2
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 4.5e-138 495.4 337 71.8
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.9e-138 495.0 337 72.1
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.0e-137 494.2 276 83.7
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 1.3e-137 493.8 323 74.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.2e-137 493.0 290 80.7
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.8e-137 492.3 296 78.4
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 5.0e-137 491.9 297 78.5
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 5.0e-137 491.9 297 78.5
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 8.5e-137 491.1 297 78.1
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 2.5e-136 489.6 304 78.3
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.6e-135 486.9 330 76.1
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 3.6e-135 485.7 344 69.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-134 483.8 294 75.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.5e-133 480.3 326 72.7
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.4e-133 478.8 313 74.1
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 5.7e-133 478.4 385 64.9
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.1e-131 474.2 272 81.2
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.7e-130 469.5 293 75.4
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.7e-129 466.8 390 61.5
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 2.9e-129 466.1 337 68.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 3.8e-129 465.7 258 88.4
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.4e-126 457.2 291 75.3
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 6.8e-126 454.9 291 70.8
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 6.8e-126 454.9 295 70.8
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.2e-125 454.1 323 69.7
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.4e-125 452.2 293 71.7
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.3e-124 450.7 352 65.1
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 2.2e-124 449.9 321 72.3
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 9.2e-123 444.5 292 72.3
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.7e-121 440.3 288 75.7
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.0e-121 438.7 273 76.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.0e-121 438.7 273 76.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.0e-121 438.7 273 76.6
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 8.6e-121 438.0 311 67.2
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.6e-119 433.7 245 84.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.0e-118 431.0 299 71.2
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.0e-118 429.1 354 64.4
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 5.2e-118 428.7 260 81.5
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.0e-117 426.8 243 83.5
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.5e-117 424.9 332 62.0
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.3e-116 424.1 329 62.6
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 6.4e-116 421.8 301 72.4
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.4e-116 421.8 328 65.9
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-115 420.6 323 66.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.2e-115 417.9 329 62.0
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.2e-114 417.5 396 56.1
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.0e-113 414.5 236 83.5
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.6e-112 408.7 332 60.8
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.2e-106 391.0 332 61.4
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.7e-105 387.1 340 59.1
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 8.6e-105 384.8 214 86.9
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 7.3e-104 381.7 368 57.6
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-101 374.0 212 84.9
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 2.0e-101 373.6 247 72.9
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.4e-101 372.5 256 73.0
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.2e-100 370.2 322 57.8
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.9e-99 367.1 226 77.4
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 4.6e-98 362.5 335 60.6
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 6.6e-97 358.6 314 60.2
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 6.2e-95 352.1 268 62.3
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 5.8e-93 345.5 431 51.3
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 3.2e-91 339.7 286 59.4
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 1.7e-89 334.0 314 52.9
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 8.7e-89 331.6 213 76.5
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 2.6e-85 320.1 210 74.3
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.8e-85 318.9 202 74.8
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-78 297.7 321 52.6
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 3.4e-77 293.1 171 82.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 2.2e-76 290.4 283 54.1
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.9e-76 289.3 195 73.8
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 6.4e-76 288.9 159 82.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.6e-74 284.3 155 83.9
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.0e-73 281.6 284 53.9
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.3e-73 281.2 212 65.1
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.9e-72 277.3 188 70.2
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 8.1e-71 271.9 186 73.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 2.4e-70 270.4 282 50.7
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-67 261.5 177 71.8
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.9e-66 255.4 154 77.9
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.3e-63 248.1 283 45.6
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-61 241.5 172 66.9
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.5e-59 233.8 148 74.3
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.2e-59 233.0 274 46.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 9.3e-59 231.9 239 51.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.0e-57 228.4 175 68.0
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 3.7e-55 219.9 159 67.3
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 6.9e-54 215.7 122 82.8
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 2.0e-53 214.2 134 75.4
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.7e-52 211.1 149 68.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 3.2e-51 206.8 179 57.0
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 4.6e-50 203.0 205 57.1
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.0e-48 197.6 274 43.8
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 2.5e-48 197.2 196 58.7
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-45 188.3 180 52.2
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 2.9e-44 183.7 171 54.4
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 5.1e-41 172.9 119 68.9
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 6.3e-39 166.0 148 60.1
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.9e-36 157.1 112 68.8
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 2.8e-31 140.6 113 59.3
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.1e-30 136.7 81 79.0
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 8.5e-28 129.0 70 87.1
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-27 128.3 181 39.2
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.0e-24 117.9 102 56.9
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 2.6e-24 117.5 72 76.4
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 4.0e-17 93.6 67 64.2
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 4.0e-17 93.6 51 82.4
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 1.7e-15 88.2 156 39.7
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.7e-15 87.0 147 40.1
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.8e-14 84.7 51 66.7
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 9.1e-14 82.4 50 74.0
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.0e-13 81.3 146 38.4
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 2.7e-13 80.9 79 49.4
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 3.5e-13 80.5 56 67.9
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 7.7e-13 79.3 121 38.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.3e-12 77.8 47 74.5
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 3.8e-12 77.0 42 85.7
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 2.5e-11 74.3 87 47.1
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 9.5e-11 72.4 48 72.9
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 1.5e-08 65.1 208 32.2
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 9.8e-08 62.4 41 75.6
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 1.3e-07 62.0 202 30.2
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 7.0e-06 56.2 222 28.4


User provided reference genes

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