Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 1.2e-161 573.2 292 100.0
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 9.3e-127 457.2 295 77.6
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 1.2e-126 456.8 295 77.6
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 3.6e-126 455.3 294 78.6
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 3.0e-125 452.2 295 76.9
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 1.9e-124 449.5 295 76.3
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 1.6e-123 446.4 293 75.4
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 1.6e-123 446.4 294 76.9
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 4.8e-123 444.9 293 75.1
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 4.8e-123 444.9 293 75.1
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 4.8e-123 444.9 279 78.1
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 1.4e-122 443.4 290 73.4
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 1.4e-122 443.4 295 75.9
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 6.9e-122 441.0 295 75.3
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 2.6e-121 439.1 295 74.2
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 3.4e-121 438.7 295 73.6
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 4.5e-121 438.3 275 78.2
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 7.7e-121 437.6 295 74.2
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 7.7e-121 437.6 304 70.7
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.3e-120 436.8 279 76.7
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 8.5e-120 434.1 295 73.9
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 8.5e-120 434.1 275 78.2
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 2.5e-119 432.6 294 73.8
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 4.2e-119 431.8 304 70.1
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 1.2e-118 430.3 305 69.5
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 2.1e-118 429.5 291 75.6
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 2.7e-118 429.1 292 75.3
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 2.7e-118 429.1 308 68.8
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 7.9e-118 427.6 291 74.6
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 7.9e-118 427.6 303 70.6
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 1.0e-117 427.2 282 74.8
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 1.0e-117 427.2 317 69.7
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 1.0e-117 427.2 308 69.2
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 1.0e-117 427.2 278 75.5
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 1.4e-117 426.8 293 72.4
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 1.4e-117 426.8 280 76.1
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 3.0e-117 425.6 291 74.9
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 5.1e-117 424.9 294 73.8
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 8.8e-117 424.1 293 72.4
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 8.8e-117 424.1 291 73.5
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 1.5e-116 423.3 308 69.2
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.5e-116 423.3 297 71.4
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 1.5e-116 423.3 293 72.7
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 2.0e-116 422.9 282 73.8
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 2.0e-116 422.9 293 72.0
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 2.6e-116 422.5 293 70.6
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 2.6e-116 422.5 300 70.3
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 2.6e-116 422.5 295 73.2
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 3.3e-116 422.2 292 71.6
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 6.3e-115 417.9 301 68.4
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 1.4e-114 416.8 295 71.5
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 1.8e-114 416.4 291 73.2
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 2.4e-114 416.0 291 71.1
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 3.1e-114 415.6 293 70.0
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 3.1e-114 415.6 274 74.5
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 4.1e-114 415.2 305 69.2
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 5.3e-114 414.8 281 72.6
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 9.1e-114 414.1 296 70.6
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 9.1e-114 414.1 280 75.0
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 1.5e-113 413.3 292 71.6
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 2.0e-113 412.9 311 67.2
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 2.6e-113 412.5 290 71.7
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 7.7e-113 411.0 280 73.2
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 1.3e-112 410.2 297 70.0
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 1.3e-112 410.2 293 71.7
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 1.7e-112 409.8 293 70.3
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 1.7e-112 409.8 277 72.6
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 2.2e-112 409.5 300 68.7
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 5.0e-112 408.3 279 72.0
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 8.5e-112 407.5 292 71.2
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 3.2e-111 405.6 297 69.7
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 5.5e-111 404.8 281 72.6
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 5.5e-111 404.8 281 72.6
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 5.5e-111 404.8 281 70.1
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.6e-110 403.3 294 70.7
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 2.1e-110 402.9 281 71.5
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 2.7e-110 402.5 277 73.3
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 4.7e-110 401.7 281 71.5
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 2.3e-109 399.4 294 69.0
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 2.3e-109 399.4 298 69.1
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 2.3e-109 399.4 292 69.5
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 5.2e-109 398.3 371 58.0
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 5.2e-109 398.3 302 65.9
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 5.2e-109 398.3 296 69.3
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 5.2e-109 398.3 293 69.6
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 6.7e-109 397.9 277 73.3
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 7.4e-108 394.4 296 68.6
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 2.2e-107 392.9 292 68.5
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 6.3e-107 391.3 294 69.0
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 5.3e-106 388.3 292 67.1
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 1.6e-105 386.7 446 50.4
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 6.5e-104 381.3 277 67.9
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 1.9e-103 379.8 271 72.0
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 1.4e-101 373.6 293 67.2
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 2.3e-101 372.9 299 66.2
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 6.7e-101 371.3 274 68.2
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.1e-98 360.9 253 71.9
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 2.0e-97 359.8 285 66.0
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 3.5e-97 359.0 244 73.4
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 2.9e-96 355.9 266 67.7
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 6.8e-93 344.7 294 61.9
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 8.8e-93 344.4 271 66.8
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 8.8e-93 344.4 293 61.4
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 1.3e-88 330.5 259 64.9
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 2.2e-88 329.7 278 63.3
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 8.0e-86 321.2 204 77.5
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 3.0e-85 319.3 203 75.9
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 2.2e-83 313.2 209 75.1
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 1.8e-82 310.1 284 55.6
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 2.3e-80 303.1 275 59.6
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 4.3e-79 298.9 257 61.1
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 2.3e-77 293.1 286 52.4
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.2e-75 286.6 292 54.5
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 6.4e-75 285.0 292 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 3.9e-72 275.8 273 52.4
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 3.9e-72 275.8 272 52.6
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 6.8e-69 265.0 276 51.4
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 8.9e-69 264.6 269 52.8
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 6.4e-67 258.5 164 75.0
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 1.1e-66 257.7 252 59.1
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 5.0e-64 248.8 168 75.0
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 8.6e-64 248.1 267 49.1
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 6.8e-61 238.4 168 72.6
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.2e-58 229.6 273 47.6
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 2.7e-57 226.5 278 47.1
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 9.5e-55 218.0 215 58.6
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 4.7e-54 215.7 157 73.2
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 2.3e-53 213.4 262 52.7
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.5e-39 166.8 117 71.8
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 1.8e-37 160.6 133 59.4
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 1.2e-33 147.9 134 57.5
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 2.9e-19 100.1 96 54.2
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 1.9e-18 97.4 124 42.7
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.3e-14 84.7 243 35.4
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 3.9e-08 63.2 180 33.9


User provided reference genes

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