Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 8.1e-234 813.5 461 100.0
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 6.1e-157 558.1 328 83.8
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.8e-156 556.6 336 81.2
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 6.8e-156 554.7 325 84.3
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 2.6e-155 552.7 321 84.4
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 3.4e-155 552.4 312 85.9
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.7e-155 551.6 327 84.1
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 7.5e-155 551.2 301 88.7
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 9.8e-155 550.8 303 87.8
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 9.8e-155 550.8 327 84.1
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.2e-154 549.7 327 83.5
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.2e-154 549.7 332 82.2
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 2.9e-154 549.3 303 87.5
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 2.9e-154 549.3 296 89.5
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 4.9e-154 548.5 308 86.4
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 6.4e-154 548.1 326 82.8
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.8e-153 546.6 315 83.8
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.4e-153 546.2 314 85.7
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 3.2e-153 545.8 334 81.7
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.2e-153 545.8 328 82.9
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 4.1e-153 545.4 333 81.4
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.2e-152 543.9 319 83.7
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.2e-152 543.9 328 81.1
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.6e-152 543.5 334 80.8
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.7e-152 542.7 321 83.2
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.5e-152 542.3 334 80.5
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 7.8e-152 541.2 325 82.2
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.0e-151 540.8 328 81.1
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.3e-151 540.4 330 81.8
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.3e-151 540.4 330 81.8
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 1.3e-151 540.4 303 86.1
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 1.3e-151 540.4 332 80.4
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-151 540.4 332 80.4
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.7e-151 540.0 330 81.8
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 1.7e-151 540.0 330 81.8
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.7e-151 540.0 314 83.1
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 1.7e-151 540.0 331 81.0
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 1.7e-151 540.0 332 80.1
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.3e-151 539.7 301 86.4
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 2.3e-151 539.7 332 81.0
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 3.0e-151 539.3 330 81.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 3.0e-151 539.3 324 82.1
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 3.0e-151 539.3 303 85.8
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 5.0e-151 538.5 313 84.0
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.0e-151 538.5 324 81.8
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 6.6e-151 538.1 332 79.8
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 6.6e-151 538.1 329 80.9
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 6.6e-151 538.1 329 80.9
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.9e-150 536.6 313 84.3
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.9e-150 536.6 336 79.8
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.9e-150 536.6 330 81.2
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 1.9e-150 536.6 321 81.9
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 2.5e-150 536.2 320 81.6
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.5e-150 536.2 324 81.8
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 3.3e-150 535.8 322 81.7
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.3e-150 535.4 313 83.1
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 5.6e-150 535.0 325 81.5
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 5.6e-150 535.0 331 79.8
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 5.6e-150 535.0 303 85.5
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 7.3e-150 534.6 331 78.9
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 9.5e-150 534.3 342 77.2
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 9.5e-150 534.3 313 83.4
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.6e-149 533.5 330 81.5
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.6e-149 533.5 319 83.1
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-149 533.5 313 82.4
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.6e-149 533.5 332 80.7
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 2.8e-149 532.7 322 82.0
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 3.6e-149 532.3 320 82.2
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 3.6e-149 532.3 313 82.7
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 4.7e-149 531.9 315 81.0
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 4.7e-149 531.9 315 82.9
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 4.7e-149 531.9 303 84.5
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 8.0e-149 531.2 335 80.9
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.0e-148 530.8 303 84.5
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.4e-148 530.4 341 78.3
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.4e-148 530.4 341 78.3
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.8e-148 530.0 334 79.6
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.8e-148 530.0 313 82.4
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.8e-148 530.0 337 78.3
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.2e-147 527.3 334 78.7
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.6e-147 526.2 313 81.8
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 7.5e-147 524.6 330 77.6
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 9.8e-147 524.2 334 80.2
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.3e-146 523.9 333 78.4
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.7e-146 523.5 303 82.5
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.9e-146 522.7 311 81.0
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 3.7e-146 522.3 312 80.4
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 4.9e-146 521.9 318 78.9
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 4.9e-146 521.9 327 78.3
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 8.3e-146 521.2 321 79.1
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.1e-145 520.8 312 80.1
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.4e-145 519.6 330 77.0
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 5.4e-145 518.5 301 81.7
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 7.0e-145 518.1 312 80.4
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 7.0e-145 518.1 332 76.5
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.2e-144 517.3 331 77.3
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.2e-144 517.3 336 76.5
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.7e-144 516.2 327 77.1
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.7e-144 516.2 334 75.7
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.5e-144 515.8 320 79.4
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.7e-143 513.5 332 75.9
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 3.9e-143 512.3 352 72.7
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 8.6e-143 511.1 301 80.1
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.5e-142 510.4 330 74.5
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 1.9e-142 510.0 322 79.5
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.5e-142 509.6 334 74.6
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.5e-142 509.6 334 74.9
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.5e-142 509.6 299 83.6
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 7.3e-142 508.1 357 72.5
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 7.3e-142 508.1 314 78.7
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.2e-141 507.3 301 79.7
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 1.6e-141 506.9 288 83.3
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 2.1e-141 506.5 329 75.1
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.8e-141 506.1 329 74.8
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 8.1e-141 504.6 314 79.3
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.8e-140 503.4 334 73.4
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 3.1e-140 502.7 331 74.0
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 3.4e-139 499.2 336 73.5
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 5.8e-139 498.4 427 63.2
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 7.5e-139 498.0 320 77.5
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.1e-137 494.2 325 76.6
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 2.7e-136 489.6 271 85.2
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.8e-133 479.6 303 76.2
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.6e-133 479.2 268 87.7
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 8.1e-133 478.0 315 74.6
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 3.4e-131 472.6 275 85.5
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 2.4e-129 466.5 329 72.3
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 4.6e-128 462.2 327 70.9
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 5.1e-127 458.8 328 72.9
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.1e-127 458.8 333 70.3
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 8.6e-127 458.0 237 90.7
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 9.6e-126 454.5 338 68.6
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 3.6e-125 452.6 264 81.1
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 4.0e-124 449.1 333 64.6
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 3.2e-121 439.5 301 67.8
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.5e-120 436.0 242 84.7
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 6.0e-120 435.3 348 67.8
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.6e-119 431.8 301 70.1
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.9e-118 430.3 298 68.5
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.1e-116 424.5 303 66.3
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 5.3e-116 422.2 301 65.4
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 7.1e-113 411.8 299 64.2
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.5e-112 409.5 322 65.2
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.5e-110 404.1 315 65.1
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 1.3e-109 401.0 374 59.1
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.3e-109 401.0 221 87.8
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.6e-109 399.4 332 58.4
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 9.3e-105 384.8 332 63.3
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 5.5e-97 359.0 238 75.2
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.5e-89 333.6 316 54.1
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 5.7e-86 322.4 213 70.0
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 3.9e-79 299.7 254 65.0
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 9.1e-68 261.9 150 81.3
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.2e-62 245.0 319 48.3
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 7.5e-54 215.7 169 60.9
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 2.3e-50 204.1 127 74.0
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.9e-41 174.5 164 56.7
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 1.3e-29 135.2 89 75.3
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 7.3e-25 119.4 103 63.1
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.6e-24 118.2 280 28.9
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 5.8e-22 109.8 65 75.4
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 6.4e-21 106.3 372 26.3
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 7.1e-20 102.8 308 26.9
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.3e-18 98.6 382 25.9
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.9e-18 97.1 249 33.7
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 1.8e-15 88.2 59 72.9
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 4.4e-14 83.6 61 70.5
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 4.4e-14 83.6 61 70.5
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 9.9e-14 82.4 81 61.7
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 3.8e-13 80.5 61 68.9
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 5.1e-10 70.1 108 36.1
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 8.7e-10 69.3 35 88.6
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 4.3e-09 67.0 34 88.2
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 7.3e-09 66.2 49 65.3
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 9.6e-09 65.9 33 84.8
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 1.8e-07 61.6 41 68.3
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 3.1e-07 60.8 41 65.9
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 5.2e-07 60.1 39 69.2


User provided reference genes

Program Settings