Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 0.0e+00 1464.1 712 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-255 885.2 720 60.7
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.6e-252 874.8 730 59.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.9e-250 869.4 709 60.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.5e-250 869.0 718 59.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.2e-249 866.7 716 60.2
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 8.9e-248 860.5 734 58.2
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.7e-244 849.0 686 59.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.1e-243 844.7 707 58.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.6e-241 839.7 700 59.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.1e-241 839.3 698 58.5
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 6.9e-240 834.3 703 57.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.0e-239 832.8 667 59.5
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 3.4e-239 832.0 758 55.8
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.3e-238 830.1 706 57.2
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.4e-238 827.8 709 57.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.2e-237 825.5 666 59.8
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 4.2e-237 825.1 714 55.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 5.4e-237 824.7 698 58.7
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 9.3e-237 823.9 686 58.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 9.3e-237 823.9 706 58.2
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.0e-235 820.5 699 57.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.3e-235 819.3 726 56.2
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.6e-235 817.8 666 59.3
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 8.7e-235 817.4 665 59.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.9e-234 816.2 732 56.0
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.3e-234 815.5 698 56.4
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 4.3e-234 815.1 721 56.3
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.3e-234 814.3 699 57.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.3e-233 813.5 708 58.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.6e-233 813.1 703 56.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.6e-233 813.1 712 57.2
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.8e-233 812.4 728 56.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.8e-232 809.7 706 56.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.8e-232 809.7 699 56.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 5.3e-232 808.1 707 56.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.3e-232 808.1 689 57.3
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.3e-232 808.1 678 57.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.9e-232 807.7 678 57.5
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.2e-231 807.0 714 55.5
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.5e-231 806.6 665 58.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-231 806.6 701 57.1
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.5e-231 806.6 710 56.2
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.6e-231 805.8 704 57.4
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 9.9e-231 803.9 726 54.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.3e-230 803.5 714 55.3
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.3e-230 803.5 702 56.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.9e-230 802.4 715 55.0
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.8e-230 802.0 672 58.8
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 6.4e-230 801.2 675 59.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 8.4e-230 800.8 702 56.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.1e-229 800.4 729 56.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.6e-228 796.6 718 55.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 7.9e-228 794.3 708 55.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-227 793.1 665 57.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-226 790.4 741 54.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-226 790.4 730 54.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.5e-226 789.3 697 55.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.6e-226 788.1 672 56.2
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.6e-226 788.1 694 54.5
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 7.4e-226 787.7 665 57.4
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.8e-225 785.8 711 54.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 4.8e-225 785.0 669 57.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.2e-225 784.6 665 57.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 8.1e-225 784.3 669 57.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.4e-223 778.9 754 52.4
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.8e-223 778.1 706 57.1
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 7.6e-223 777.7 661 57.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 8.4e-222 774.2 680 55.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.1e-221 773.9 595 60.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.0e-220 768.1 663 55.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.1e-219 765.0 677 55.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.6e-218 761.5 661 56.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.6e-217 760.0 661 55.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.8e-217 759.2 662 54.8
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.7e-217 758.8 659 54.2
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 8.2e-217 757.7 589 62.5
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.4e-216 756.9 662 54.4
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.8e-216 756.5 659 53.7
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.4e-216 756.1 706 55.7
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.1e-216 755.7 673 54.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.6e-215 752.7 670 53.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.5e-215 751.9 659 53.7
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.9e-214 748.4 872 46.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 8.4e-214 747.7 686 54.1
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-213 746.5 661 53.6
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.2e-212 743.8 715 52.4
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-212 742.3 670 52.2
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.5e-212 742.3 670 52.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.6e-212 741.9 682 53.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 6.0e-212 741.5 699 53.5
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.3e-211 740.3 674 53.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-211 740.0 623 58.7
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.3e-211 739.6 702 52.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 8.7e-211 737.6 691 51.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.5e-210 736.9 681 53.7
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.3e-210 735.7 680 53.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.4e-210 734.6 702 51.7
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 7.4e-210 734.6 702 53.1
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.1e-208 729.2 677 54.1
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.3e-208 728.4 718 51.3
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 2.0e-207 726.5 725 50.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.6e-207 724.5 664 52.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.0e-206 724.2 678 51.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 4.6e-204 715.3 719 51.3
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 6.7e-203 711.4 586 59.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.3e-202 708.8 617 56.4
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.7e-202 708.4 714 50.1
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-201 706.8 722 51.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-199 698.7 602 56.0
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 5.9e-199 698.4 671 54.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-198 697.6 664 53.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.9e-198 696.0 693 50.6
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.5e-198 694.5 768 49.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.9e-196 688.0 731 49.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.1e-194 684.1 673 52.9
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 7.4e-194 681.4 664 52.9
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.5e-189 666.4 725 46.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.3e-185 654.1 672 48.5
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.8e-184 650.2 636 51.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.1e-184 647.9 668 50.7
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.6e-180 637.1 670 49.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.0e-179 632.9 678 48.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-176 624.0 678 47.8
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 4.1e-176 622.5 525 58.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.0e-174 617.8 726 45.9
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.8e-169 599.7 516 55.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.6e-164 582.8 558 53.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.8e-159 565.1 664 44.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.6e-156 556.2 708 44.6
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.9e-153 546.6 715 43.5
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-142 511.1 337 69.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.4e-136 490.3 536 46.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.8e-131 474.2 422 52.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.7e-124 449.5 386 54.4
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.3e-108 398.3 297 60.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.8e-100 370.5 371 47.7
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 8.2e-100 369.0 387 49.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.9e-97 360.5 231 72.3
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 7.4e-93 345.9 449 43.0
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 8.2e-92 342.4 388 46.4
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.4e-91 340.9 311 50.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 3.2e-88 330.5 563 35.7
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 6.7e-78 296.2 533 34.3
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.7e-71 274.2 558 33.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.0e-69 268.1 317 46.1
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 5.7e-61 240.0 164 68.3
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.6e-58 231.9 158 66.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.4e-51 208.0 150 66.0
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.0e-51 206.5 213 48.4
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-49 202.6 233 45.9
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-44 185.3 128 62.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-43 182.6 142 59.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.8e-38 163.3 379 30.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-36 159.1 99 70.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-36 159.1 99 70.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-36 159.1 99 70.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.2e-34 152.5 238 40.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-31 141.0 166 44.0
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.2e-30 137.1 202 40.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.5e-24 119.0 176 43.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.8e-22 110.2 206 37.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 8.9e-22 109.8 238 33.2
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-21 107.8 262 31.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.4e-19 101.7 59 76.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 7.8e-18 96.7 240 30.4
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-17 94.4 74 56.8
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 4.0e-14 84.3 147 36.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 6.8e-14 83.6 230 29.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-12 78.6 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-12 78.6 48 68.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.4e-11 75.9 46 69.6
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.8e-07 60.8 126 32.5


User provided reference genes

Program Settings