Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 0.0e+00 1372.1 967 100.0
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.1e-235 820.8 893 77.9
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 7.4e-221 771.5 927 72.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.3e-220 770.8 897 72.5
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 4.8e-220 768.8 921 68.2
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.4e-219 766.5 928 71.3
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.1e-219 766.1 957 69.7
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.0e-218 763.5 948 69.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.7e-217 760.4 1017 61.7
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.9e-217 759.6 925 72.1
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.1e-216 757.7 921 67.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.7e-215 753.1 1039 64.9
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.7e-215 753.1 903 71.2
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 7.9e-215 751.5 962 68.5
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.0e-214 751.1 927 68.9
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.4e-213 745.7 893 65.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.7e-213 745.3 1010 62.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 5.7e-213 745.3 891 68.0
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 6.3e-212 741.9 937 70.1
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 6.3e-212 741.9 924 71.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.5e-210 737.3 987 67.9
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.0e-210 736.9 978 67.5
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.0e-210 736.9 957 63.7
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.4e-208 730.7 1009 64.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.9e-208 730.3 937 69.5
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.2e-207 727.6 927 71.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.2e-207 727.6 819 77.9
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.0e-206 724.5 934 69.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.0e-206 724.5 997 67.2
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.4e-206 724.2 923 70.6
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 3.9e-206 722.6 926 69.8
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 6.7e-206 721.8 885 71.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 9.7e-205 718.0 895 71.7
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.3e-204 717.6 1012 62.8
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.7e-204 717.2 941 69.4
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.7e-204 716.1 924 68.7
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 8.2e-204 714.9 923 68.7
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 8.2e-204 714.9 923 68.7
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.4e-203 714.1 887 70.8
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.5e-202 709.5 925 69.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.5e-202 709.5 985 66.9
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.5e-202 709.5 952 69.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.7e-202 708.4 954 69.2
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.0e-201 708.0 957 69.0
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.0e-201 708.0 893 73.0
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.3e-201 707.6 900 69.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.2e-201 706.8 901 69.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.8e-201 706.1 917 68.2
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.0e-201 705.7 939 63.5
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.1e-200 704.5 924 69.3
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 7.2e-200 701.8 993 60.3
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 7.2e-200 701.8 919 62.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.6e-199 699.5 855 74.2
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.1e-199 698.7 984 64.1
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.0e-198 698.0 923 67.8
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.0e-198 698.0 1000 61.1
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.0e-198 696.0 934 58.1
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 9.7e-197 691.4 824 74.2
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.1e-195 688.0 882 70.6
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.4e-195 687.6 921 67.4
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.8e-195 687.2 863 70.6
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 4.1e-195 686.0 928 67.0
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.9e-194 682.2 1010 62.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.0e-193 681.4 980 57.0
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.0e-193 681.4 891 69.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.3e-193 681.0 807 73.1
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.2e-193 680.2 932 66.0
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.9e-193 679.9 888 67.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.8e-193 679.5 920 68.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.5e-192 677.6 839 69.4
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 8.0e-191 671.8 835 71.9
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.3e-190 670.2 994 60.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.3e-190 670.2 994 60.0
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.2e-189 667.9 804 70.9
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.6e-189 666.8 806 70.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.7e-188 664.1 925 60.8
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.7e-188 664.1 878 66.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.8e-188 663.3 836 67.9
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.3e-188 662.1 991 61.0
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.0e-185 654.8 833 68.4
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.0e-185 652.5 913 66.4
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 2.5e-184 650.2 913 68.0
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.5e-184 650.2 979 65.5
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.5e-184 650.2 829 72.5
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 3.3e-184 649.8 920 67.0
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 3.3e-184 649.8 951 65.1
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 4.2e-184 649.4 911 68.5
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 7.2e-184 648.7 855 69.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 9.5e-184 648.3 917 64.9
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 9.5e-184 648.3 808 68.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-183 647.9 855 71.9
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.2e-183 647.9 912 67.0
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.6e-183 646.4 823 70.0
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 6.1e-183 645.6 871 67.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.0e-182 644.8 946 59.0
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 6.8e-182 642.1 915 67.4
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-181 641.3 996 62.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.7e-181 639.0 913 65.2
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.3e-180 637.9 825 61.8
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 4.9e-180 636.0 769 70.0
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 5.4e-179 632.5 914 65.6
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.7e-178 630.2 914 63.9
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 6.6e-177 625.5 910 65.6
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.5e-176 624.4 917 65.2
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.3e-176 623.2 923 61.5
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.6e-175 620.9 885 62.0
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.1e-175 620.5 896 66.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.8e-175 620.2 976 57.3
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 4.7e-175 619.4 898 66.5
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 6.1e-175 619.0 771 70.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.0e-174 618.2 811 70.5
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 3.1e-174 616.7 897 66.1
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 6.8e-174 615.5 904 65.6
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 8.9e-174 615.1 879 55.6
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-171 608.2 1021 58.8
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-171 607.1 883 60.0
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.5e-170 603.2 867 61.1
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-169 601.3 883 59.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-169 601.3 883 59.6
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-166 591.7 938 62.0
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.1e-166 590.1 831 61.9
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 4.4e-165 586.3 802 64.3
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 9.8e-165 585.1 889 62.2
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-163 581.6 888 60.4
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.3e-161 574.7 784 65.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 6.6e-161 572.4 888 60.4
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.9e-160 570.9 850 58.6
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.3e-160 570.1 781 70.4
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.1e-158 565.1 818 64.7
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 4.0e-158 563.1 884 60.5
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 5.8e-157 559.3 884 58.7
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.6e-154 551.2 924 59.6
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.7e-154 550.4 866 59.1
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.1e-152 545.0 914 59.7
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.9e-152 544.3 821 55.8
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-151 541.2 971 51.9
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 5.8e-149 532.7 796 67.5
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 6.4e-148 529.3 825 64.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.6e-144 515.4 741 64.1
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.4e-139 499.6 689 66.5
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.5e-136 490.7 684 73.2
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.6e-133 480.7 775 48.8
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 6.4e-132 476.1 736 62.6
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.0e-125 454.5 917 51.0
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.3e-121 441.0 1001 43.6
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.1e-119 434.5 1038 46.0
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.9e-118 429.5 688 59.4
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.8e-116 423.7 853 56.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 3.5e-114 417.2 792 52.7
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 5.0e-108 396.7 653 70.4
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-106 391.0 1003 44.0
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-105 388.3 644 75.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 3.6e-98 364.0 947 48.4
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.2e-95 352.8 409 59.4
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 3.0e-89 334.3 839 33.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 6.7e-89 333.2 475 48.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 8.5e-84 316.2 550 56.7
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.0e-81 309.3 646 55.7
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.8e-81 308.5 746 47.9
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-80 305.4 421 52.7
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 5.4e-78 297.0 615 59.3
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.9e-76 291.2 447 47.4
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.6e-66 258.8 263 63.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.9e-60 237.7 311 75.6
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.2e-50 203.8 135 74.1
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 7.5e-48 196.8 220 49.5
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-42 179.5 122 68.0
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.9e-40 169.9 211 47.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 4.3e-27 127.9 88 72.7
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 7.6e-24 117.1 110 56.4
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 9.9e-24 116.7 70 75.7
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.5e-21 108.2 120 51.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 4.0e-17 94.7 239 83.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.2e-16 93.2 69 71.0
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.6e-11 74.3 62 53.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.1e-10 72.4 183 29.0
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 9.0e-09 67.0 206 26.7


User provided reference genes

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