Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 4.9e-55 217.6 114 100.0
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.5e-19 99.8 70 74.3
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 2.5e-19 99.0 62 79.0
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 5.6e-19 97.8 63 81.0
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 2.8e-18 95.5 61 78.7
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 6.2e-18 94.4 61 77.0
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 6.2e-18 94.4 61 77.0
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.4e-17 93.2 61 75.4
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.8e-17 92.8 63 73.0
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.8e-17 92.8 81 63.0
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.8e-17 92.8 61 75.4
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 9.0e-17 90.5 67 68.7
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 1.2e-16 90.1 62 71.0
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 2.6e-16 89.0 100 48.0
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 3.4e-16 88.6 65 64.6
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 3.4e-16 88.6 66 65.2
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 3.4e-16 88.6 60 73.3
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 4.5e-16 88.2 61 68.9
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 4.5e-16 88.2 61 68.9
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 5.8e-16 87.8 65 63.1
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 5.8e-16 87.8 63 68.3
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 7.6e-16 87.4 61 72.1
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 7.6e-16 87.4 54 74.1
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 9.9e-16 87.0 76 57.9
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.7e-15 86.3 63 68.3
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 2.9e-15 85.5 61 70.5
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 8.4e-15 84.0 60 68.3
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 1.4e-14 83.2 60 66.7
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 2.4e-14 82.4 50 72.0
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 4.2e-14 81.6 62 66.1
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 5.4e-14 81.3 58 63.8
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.2e-13 80.1 50 74.0
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.2e-13 80.1 50 74.0
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 1.6e-13 79.7 50 72.0
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 2.1e-13 79.3 55 67.3
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 3.5e-13 78.6 53 67.9
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 3.5e-13 78.6 58 65.5
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 3.5e-13 78.6 53 67.9
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 4.6e-13 78.2 60 63.3
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 4.6e-13 78.2 48 75.0
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 6.0e-13 77.8 61 65.6
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 7.9e-13 77.4 62 64.5
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 7.9e-13 77.4 57 66.7
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.0e-12 77.0 83 54.2
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.0e-12 77.0 59 64.4
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.0e-12 77.0 59 64.4
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 1.8e-12 76.3 52 67.3
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 1.8e-12 76.3 52 67.3
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.8e-12 76.3 71 53.5
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 2.3e-12 75.9 53 64.2
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 2.3e-12 75.9 50 68.0
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.3e-12 75.9 50 68.0
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 3.0e-12 75.5 68 55.9
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 3.0e-12 75.5 61 59.0
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 3.0e-12 75.5 60 65.0
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.9e-12 75.1 71 52.1
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 5.1e-12 74.7 61 60.7
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 5.1e-12 74.7 59 62.7
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 5.1e-12 74.7 56 69.6
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 6.7e-12 74.3 53 64.2
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 6.7e-12 74.3 53 64.2
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 8.7e-12 73.9 68 54.4
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 8.7e-12 73.9 57 61.4
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 1.1e-11 73.6 58 62.1
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 1.9e-11 72.8 57 57.9
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 1.9e-11 72.8 57 57.9
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 1.9e-11 72.8 54 66.7
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 2.5e-11 72.4 63 57.1
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 3.3e-11 72.0 52 61.5
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 4.3e-11 71.6 53 58.5
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 4.3e-11 71.6 52 61.5
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 4.3e-11 71.6 57 56.1
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 4.3e-11 71.6 58 60.3
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.3e-10 70.1 60 56.7
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.8e-10 68.9 62 59.7
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 3.6e-10 68.6 52 61.5
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 6.2e-10 67.8 48 62.5
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.8e-09 66.2 65 50.8
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 2.4e-09 65.9 48 62.5
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 9.0e-09 63.9 52 57.7
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 3.4e-08 62.0 50 58.0
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 3.4e-08 62.0 73 45.2
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 4.5e-08 61.6 46 54.3
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 4.5e-08 61.6 32 78.1
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 2.9e-07 58.9 34 76.5
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 5.5e-06 54.7 53 50.9


User provided reference genes

Program Settings