Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 5.6e-173 610.9 322 100.0
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 1.7e-100 370.2 322 61.2
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.6e-98 362.8 274 66.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.5e-97 357.8 272 65.4
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.5e-96 357.1 323 59.1
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.2e-96 355.5 273 67.0
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 4.2e-96 355.5 315 60.6
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 5.5e-96 355.1 278 65.5
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.2e-96 354.8 273 65.9
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.2e-95 354.0 278 65.1
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.6e-95 353.6 299 61.2
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.6e-95 352.4 303 61.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.6e-95 352.4 302 60.6
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 8.0e-95 351.3 278 63.3
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.3e-94 349.7 277 63.5
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 8.8e-94 347.8 278 62.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 5.7e-93 345.1 277 62.8
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.2e-92 343.2 313 58.5
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.2e-92 343.2 305 60.3
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 3.7e-92 342.4 279 63.4
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 2.4e-91 339.7 261 65.9
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.2e-90 337.4 307 58.3
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 2.7e-90 336.3 278 60.8
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 3.5e-90 335.9 277 63.5
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 4.5e-90 335.5 273 62.3
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.0e-89 334.3 320 56.6
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.3e-89 334.0 305 57.0
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 8.5e-89 331.3 318 56.0
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.5e-88 330.5 269 62.5
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.5e-88 330.5 273 62.3
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.2e-88 329.3 308 56.2
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 6.1e-87 325.1 275 60.7
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.0e-86 324.3 278 57.9
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.3e-86 323.2 272 59.2
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.8e-86 321.6 273 60.8
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.5e-85 320.5 274 59.5
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 5.7e-85 318.5 276 58.0
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.8e-85 317.8 272 58.8
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 2.8e-84 316.2 274 59.1
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.4e-83 313.9 309 57.3
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.4e-83 313.9 274 58.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 7.0e-83 311.6 321 54.5
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.6e-82 310.5 318 55.7
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 5.9e-82 308.5 268 57.1
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.3e-81 307.4 303 57.4
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.7e-81 307.0 266 59.0
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 2.2e-81 306.6 300 56.0
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.9e-81 306.2 300 55.7
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 6.5e-81 305.1 309 53.7
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 8.5e-81 304.7 270 57.4
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.5e-80 303.9 299 54.5
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.5e-80 303.9 278 55.0
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.5e-80 303.1 272 58.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.2e-80 302.8 300 54.0
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 4.2e-80 302.4 301 55.8
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.2e-79 300.8 277 54.5
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 3.6e-79 299.3 370 49.5
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 8.0e-79 298.1 275 56.7
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.0e-78 296.2 311 51.4
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 5.2e-78 295.4 275 56.7
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.5e-77 293.9 307 54.4
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 4.4e-77 292.4 269 54.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 5.7e-77 292.0 274 54.7
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.2e-76 290.0 272 56.6
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 2.2e-76 290.0 278 55.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.8e-76 289.7 302 50.7
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.8e-76 289.7 272 56.6
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.7e-76 289.3 274 56.9
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.7e-76 289.3 278 56.5
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.6e-74 283.9 260 57.3
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 2.0e-74 283.5 223 62.3
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.0e-74 283.5 272 55.9
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.5e-74 282.3 269 53.5
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 4.5e-74 282.3 269 53.5
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 5.9e-74 282.0 322 48.4
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.7e-73 280.4 237 60.3
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.9e-73 279.6 305 50.8
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 6.6e-73 278.5 280 56.4
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.5e-72 277.3 325 49.2
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 9.5e-72 274.6 259 53.3
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 3.6e-71 272.7 305 49.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.6e-71 272.7 260 53.5
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.7e-71 272.3 251 56.2
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 1.8e-70 270.4 246 56.9
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.8e-70 270.4 254 56.7
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.5e-69 265.0 245 55.5
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.1e-67 261.2 310 48.1
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 2.4e-67 260.0 315 46.0
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.6e-65 251.9 290 50.0
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.1e-64 251.1 275 50.9
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.9e-64 250.4 324 46.3
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 9.5e-64 248.1 271 49.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.3e-62 243.4 259 49.0
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 3.1e-62 243.0 261 49.8
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.9e-60 236.5 280 46.4
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.4e-59 233.4 313 46.3
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.9e-56 223.8 270 46.3
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.2e-53 214.5 290 45.2
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 2.6e-53 213.4 280 43.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 3.4e-53 213.0 204 58.8
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 7.5e-53 211.8 219 52.1
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 3.5e-50 203.0 287 41.8
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.3e-49 201.1 197 52.3
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.4e-46 191.0 220 46.4
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.7e-44 184.1 243 43.6
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 2.9e-44 183.3 177 59.9
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 8.4e-44 181.8 166 53.6
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 4.2e-35 152.9 262 38.5
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 3.5e-34 149.8 269 37.5
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 3.0e-33 146.7 135 51.1
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.8e-31 139.4 149 48.3
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.5e-29 134.4 207 39.6
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.9e-28 130.2 128 56.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.4e-27 127.1 193 39.4
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-25 121.3 132 51.5
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 3.0e-25 120.2 93 65.6
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 4.8e-23 112.8 226 35.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.6e-21 105.5 179 36.3
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.6e-21 105.5 179 36.3
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.1e-19 101.7 163 38.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.1e-19 101.7 194 36.6
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 5.5e-19 99.4 194 36.1
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 9.3e-19 98.6 163 38.0
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.3e-17 94.0 65 72.3
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 5.1e-17 92.8 123 43.9
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 2.5e-16 90.5 136 36.8
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.8e-15 87.0 149 38.9
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 2.8e-15 87.0 86 46.5
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 5.3e-14 82.8 178 32.0
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.2e-13 81.6 79 51.9
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 2.2e-12 77.4 174 33.9
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.9e-12 76.3 63 60.3
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.9e-12 76.3 63 60.3
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 6.5e-12 75.9 65 55.4
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.4e-12 75.5 134 38.8
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 3.2e-11 73.6 155 32.3
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 7.9e-10 68.9 68 48.5
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 7.9e-10 68.9 68 48.5
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.1e-09 66.2 64 53.1
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 2.5e-08 63.9 84 40.5
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.3e-08 63.5 54 61.1
VMungo1309G2642 Vigna mungo HOM05D005448 ORTHO05D006405 4.3e-08 63.2 78 42.3


User provided reference genes

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