Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 3.5e-299 1030.8 499 100.0
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.2e-201 706.8 500 69.2
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.8e-194 682.9 484 67.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 3.4e-193 678.7 481 66.5
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.1e-191 673.7 550 62.5
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.0e-190 669.5 463 69.5
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.3e-189 666.8 494 64.0
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.2e-187 660.2 479 67.4
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.1e-187 659.4 452 69.5
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 8.0e-187 657.5 482 65.4
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.4e-186 656.8 502 63.5
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.8e-186 656.4 500 64.2
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.2e-185 653.7 498 63.3
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 2.0e-185 652.9 495 64.2
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 2.6e-185 652.5 466 67.0
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 4.4e-185 651.7 455 69.0
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 7.5e-185 651.0 481 64.2
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 1.3e-184 650.2 499 64.3
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 3.7e-184 648.7 444 68.2
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.7e-184 648.7 499 62.9
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.1e-183 647.1 460 66.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.9e-183 646.4 438 69.2
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 4.1e-183 645.2 444 67.1
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 9.2e-183 644.0 452 67.3
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 3.5e-182 642.1 499 62.9
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 4.6e-182 641.7 436 69.5
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 4.6e-182 641.7 436 69.5
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 2.3e-181 639.4 468 63.9
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 6.6e-181 637.9 464 63.8
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.5e-180 636.7 459 64.9
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.9e-180 636.3 460 66.5
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 5.6e-180 634.8 417 71.7
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 5.6e-180 634.8 465 65.8
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 9.5e-180 634.0 464 64.2
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.2e-179 633.6 455 64.8
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.8e-178 629.8 482 62.7
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.2e-178 628.2 430 67.9
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.9e-178 627.5 500 63.2
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 2.6e-177 625.9 462 63.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 4.4e-177 625.2 489 63.4
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 5.8e-177 624.8 438 67.8
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 7.6e-177 624.4 534 57.1
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 2.9e-176 622.5 458 64.6
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 4.9e-176 621.7 486 59.9
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 4.9e-176 621.7 409 70.2
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 6.4e-176 621.3 455 64.6
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 8.3e-176 620.9 441 66.2
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.4e-175 620.2 486 61.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 1.9e-175 619.8 477 62.3
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 3.2e-175 619.0 500 62.0
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 4.1e-175 618.6 505 61.4
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 2.7e-174 615.9 501 61.3
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 2.7e-174 615.9 470 62.6
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 4.6e-174 615.1 449 63.3
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.7e-173 613.2 471 62.6
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.7e-173 613.2 495 60.6
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 2.3e-173 612.8 439 66.7
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 6.6e-173 611.3 478 62.8
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.3e-172 609.0 521 59.5
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 5.6e-172 608.2 452 65.3
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 5.6e-172 608.2 472 61.4
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 5.6e-172 608.2 490 59.4
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.6e-171 606.7 415 68.2
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 2.1e-171 606.3 439 65.8
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 8.9e-170 600.9 474 60.3
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 8.9e-170 600.9 439 65.1
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 8.4e-168 594.3 390 69.2
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.6e-166 590.1 460 60.9
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.6e-166 590.1 469 61.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 6.0e-166 588.2 536 56.7
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 5.1e-165 585.1 506 58.9
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 5.1e-165 585.1 482 60.0
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 6.6e-165 584.7 439 63.3
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.5e-164 583.6 481 59.3
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 2.5e-164 582.8 392 69.1
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.8e-163 579.3 388 68.6
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 9.0e-162 574.3 525 57.1
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 4.9e-160 568.5 395 66.1
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 5.4e-159 565.1 459 59.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.0e-157 560.8 440 62.3
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.3e-157 560.5 408 65.0
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 1.7e-157 560.1 401 66.3
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.3e-156 555.4 462 59.1
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.1e-155 553.1 421 61.3
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.4e-151 538.5 414 61.8
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.3e-148 529.3 525 54.3
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 3.3e-148 529.3 444 59.7
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.9e-140 503.4 296 75.0
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 9.6e-140 501.1 311 71.7
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 4.1e-138 495.7 466 54.9
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 7.6e-137 491.5 398 60.8
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.6e-134 483.8 408 56.4
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.6e-131 473.8 360 63.3
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.2e-131 473.4 333 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 2.6e-129 466.5 366 57.4
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 5.0e-128 462.2 519 49.5
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.9e-127 460.3 386 54.7
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.1e-126 456.8 330 60.0
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.1e-119 434.5 351 60.7
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.4e-114 416.8 380 56.6
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 6.1e-110 402.1 267 71.5
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.1e-95 354.8 359 48.7
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 4.0e-93 346.3 348 47.4
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.6e-92 343.6 334 53.0
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 9.1e-90 335.1 224 69.6
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.6e-89 334.3 247 66.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 3.5e-89 333.2 224 69.2
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 5.9e-89 332.4 247 66.0
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 2.1e-86 323.9 306 52.3
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 5.2e-85 319.3 249 61.4
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 5.2e-85 319.3 249 61.4
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 8.3e-83 312.0 178 77.0
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.6e-70 271.2 404 37.1
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 8.3e-67 258.8 313 43.1
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.2e-62 245.0 222 55.9
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.6e-62 244.6 218 56.9
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.4e-58 229.6 235 51.5
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 9.6e-55 218.8 145 69.0
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 4.7e-54 216.5 192 58.3
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.7e-43 181.4 108 75.9
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.6e-41 173.3 366 31.7
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 8.1e-38 162.5 98 69.4
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 6.0e-33 146.4 328 31.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.6e-30 138.3 74 81.1
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.6e-28 131.0 73 79.5
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 4.2e-26 123.6 129 48.8
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.4e-20 104.0 359 26.2
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 5.0e-19 100.1 55 74.5
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.5e-12 78.6 375 24.5
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 1.2e-09 68.9 105 38.1


User provided reference genes

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