Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 2371.3 1194 100.0
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1968.7 1204 81.1
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1931.0 1205 80.6
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1902.1 1204 79.7
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1898.6 1204 79.7
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1892.9 1199 79.0
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1885.5 1204 78.7
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1882.1 1294 74.2
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1880.9 1201 79.4
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1872.8 1204 78.5
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1869.0 1201 78.2
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1869.0 1203 78.2
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1868.6 1207 78.0
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1865.9 1204 78.7
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1859.3 1197 77.4
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1857.8 1205 77.3
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1857.0 1204 78.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1854.7 1204 78.2
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1847.4 1204 77.0
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1845.5 1220 77.1
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1842.4 1198 76.9
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1841.2 1194 76.8
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1833.2 1203 76.7
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1830.8 1220 76.8
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1825.8 1206 76.0
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1197 77.2
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1197 77.0
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1823.5 1203 76.2
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1821.2 1194 77.0
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1821.2 1206 76.1
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1820.8 1197 77.0
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1820.4 1194 77.0
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1820.4 1197 76.7
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1818.9 1197 77.1
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1818.1 1200 76.0
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1817.7 1220 76.2
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1817.4 1194 76.9
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1817.0 1203 76.0
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1816.6 1194 76.8
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1816.6 1204 76.2
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1816.6 1200 76.2
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1816.2 1204 76.2
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1813.1 1202 75.8
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1812.7 1194 76.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1810.0 1194 76.2
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1808.1 1195 76.0
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1806.6 1198 76.3
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1804.3 1205 75.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1802.7 1204 75.7
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1800.8 1282 72.1
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1800.8 1204 75.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1800.4 1289 72.5
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1800.4 1289 72.5
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1206 75.8
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1791.2 1202 74.7
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1787.3 1198 75.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1784.2 1216 74.6
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1128 80.2
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1779.6 1211 74.5
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1772.3 1203 74.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1769.2 1202 74.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1768.4 1202 74.5
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1765.4 1194 74.6
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1765.0 1198 74.7
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1760.0 1198 74.2
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1759.2 1195 74.5
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1758.8 1205 73.9
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1758.4 1195 74.4
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1757.3 1198 74.9
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1198 74.0
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1753.4 1195 74.4
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1751.9 1196 74.6
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1193 73.8
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1744.9 1201 73.6
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1728.0 1231 72.3
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1721.1 1346 68.5
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1717.6 1204 72.1
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1714.9 1094 79.3
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1196 72.9
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1701.4 1200 73.2
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1686.0 1214 70.0
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1684.8 1195 72.4
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1678.7 1191 71.2
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1646.7 1208 70.5
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1613.6 1210 66.9
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1578.9 1194 68.3
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1566.2 1032 76.6
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1564.7 1013 78.4
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1559.3 1200 65.6
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1557.3 1199 66.1
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1532.7 1046 74.1
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1530.0 1046 73.7
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1520.0 1213 64.3
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1502.3 1023 75.3
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1472.2 982 76.7
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1469.1 989 75.4
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1467.6 983 76.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1402.1 1058 68.0
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1365.5 899 77.1
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1330.1 827 79.7
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1311.6 928 73.0
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1311.2 1225 57.1
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1241.9 866 70.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1212.2 1238 52.3
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1151.0 904 65.4
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1100.1 1229 50.1
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1086.6 1227 49.9
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.5e-271 940.3 1193 44.3
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 7.6e-268 927.9 1326 42.0
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.2e-251 873.2 1235 43.2
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 8.8e-248 861.3 518 83.2
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.2e-230 803.5 1139 43.1
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 2.2e-190 670.6 424 79.5
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 5.5e-157 559.7 432 66.2
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.1e-149 535.4 745 43.4
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 4.2e-149 533.5 306 83.7
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 3.6e-148 530.4 324 79.0
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 6.1e-148 529.6 488 60.2
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.1e-132 478.0 323 70.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 3.6e-124 450.7 351 67.5
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 4.1e-120 437.2 292 75.0
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 9.8e-114 416.0 329 68.1
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.5e-103 380.9 381 53.8
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 2.3e-99 368.2 311 62.1
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.3e-86 325.9 392 48.5
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 5.0e-86 323.9 287 56.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.5e-85 322.4 256 66.4
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 8.4e-65 253.4 157 77.7
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 2.7e-63 248.4 268 50.7
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 9.6e-53 213.4 116 83.6
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.4e-51 208.8 135 75.6
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 9.0e-51 206.8 117 81.2
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.9e-49 201.1 736 26.0
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.7e-47 195.3 138 63.0
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.3e-45 188.3 164 59.1
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 5.8e-42 177.6 146 63.0
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.7e-38 163.7 275 39.3
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.2e-36 159.1 193 50.8
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 2.9e-33 148.7 161 52.8
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.2e-31 143.3 82 87.8
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.4e-27 129.8 164 47.0
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 4.4e-21 108.2 71 70.4
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 6.3e-20 104.4 59 81.4
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.0e-17 97.1 62 75.8
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 7.4e-13 80.9 45 77.8
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.1e-11 77.0 76 57.9
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 1.1e-11 77.0 74 64.9
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 1.1e-11 77.0 74 64.9
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.3e-11 74.7 53 60.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.1e-11 73.9 234 28.2
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 4.5e-10 71.6 38 84.2
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.3e-09 70.1 70 55.7
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 2.2e-09 69.3 54 55.6
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.5e-08 66.6 54 68.5


User provided reference genes

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