Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 0.0e+00 1557.0 834 100.0
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.6e-291 1005.4 828 67.9
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.0e-287 993.4 822 68.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.9e-281 972.6 827 66.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-279 966.1 822 66.2
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.0e-278 962.6 825 66.2
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 5.7e-278 961.1 825 64.5
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 9.7e-278 960.3 833 63.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.2e-277 959.1 827 65.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.4e-276 956.4 824 64.1
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.4e-276 956.4 821 67.2
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.0e-276 954.1 825 64.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.0e-275 952.6 826 65.6
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.5e-275 951.8 826 65.9
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.0e-274 950.3 827 66.0
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.0e-274 950.3 829 62.8
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.2e-274 949.1 825 65.0
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.9e-274 948.7 826 65.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-273 946.8 828 63.3
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-273 946.8 825 63.6
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.5e-273 945.7 827 64.7
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 3.2e-273 945.3 832 66.1
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 7.2e-273 944.1 831 63.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 8.0e-272 940.6 826 61.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 3.0e-271 938.7 826 61.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 6.7e-271 937.6 831 64.1
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 8.8e-271 937.2 824 61.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.1e-268 930.2 827 62.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.0e-268 927.5 828 61.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.6e-267 926.4 824 63.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.5e-267 925.2 832 63.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.5e-267 924.9 830 63.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.5e-267 924.9 828 61.4
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.2e-266 922.5 824 64.1
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.0e-266 921.4 832 63.3
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.1e-265 920.2 838 61.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 7.2e-265 917.5 823 63.3
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 4.7e-264 914.8 832 63.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.7e-264 914.8 829 61.5
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 8.0e-264 914.1 828 61.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.4e-263 913.3 829 61.4
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.3e-263 912.5 824 62.6
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 8.8e-263 910.6 832 61.3
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.7e-261 905.2 826 61.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.6e-259 899.8 829 61.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.1e-257 893.6 825 60.6
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.9e-257 892.9 827 60.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.5e-257 892.5 834 61.4
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.2e-257 892.1 844 62.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.0e-255 887.1 827 60.1
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.8e-255 886.3 822 62.2
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.4e-254 882.1 824 60.3
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.7e-253 879.8 829 60.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.7e-251 872.5 834 59.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.9e-250 869.0 834 58.8
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-250 869.0 829 59.5
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.3e-249 865.5 823 58.6
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.3e-249 865.5 838 59.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 7.2e-249 864.4 831 60.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 4.4e-246 855.1 825 59.2
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-244 850.5 827 59.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 7.0e-244 847.8 830 56.4
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.7e-243 845.9 828 59.2
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 8.6e-242 840.9 829 58.0
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 4.3e-241 838.6 854 56.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.1e-240 836.3 837 58.1
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.6e-238 829.3 822 56.2
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 2.9e-237 825.9 817 57.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 4.1e-236 822.0 829 58.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 4.6e-235 818.5 820 57.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 3.9e-234 815.5 780 59.6
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 6.6e-234 814.7 823 57.8
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-233 813.1 823 57.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.9e-233 813.1 823 57.8
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.3e-233 811.2 836 55.9
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.6e-232 808.9 822 57.7
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.6e-232 808.9 822 57.7
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.0e-230 803.1 819 55.9
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.7e-229 800.0 866 55.4
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.2e-229 799.7 834 56.2
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.7e-229 798.9 817 56.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.1e-228 794.7 825 56.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.6e-227 793.5 920 52.9
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.0e-226 790.8 831 54.4
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 4.7e-224 781.9 829 54.3
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 8.9e-223 777.7 823 56.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 4.4e-222 775.4 847 54.1
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.3e-218 763.1 842 52.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.0e-218 762.7 827 54.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 8.6e-218 761.1 819 53.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 8.6e-218 761.1 831 54.4
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.0e-210 737.6 680 60.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.7e-210 734.6 832 56.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.4e-206 722.6 808 52.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.4e-204 715.3 695 58.4
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.9e-202 709.1 831 52.8
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.1e-201 707.6 838 51.2
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.9e-193 680.2 828 49.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 4.0e-191 672.5 846 48.5
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.7e-186 655.2 598 60.0
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.4e-182 642.9 564 60.8
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.7e-163 580.1 605 57.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 5.3e-159 565.8 601 54.4
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.3e-149 534.6 860 40.9
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 9.1e-135 485.3 457 60.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.0e-134 484.2 267 99.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 5.9e-134 482.6 862 38.4
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 7.7e-134 482.3 831 40.3
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.2e-132 475.7 833 39.6
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.2e-127 458.8 425 61.4
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.4e-120 436.0 387 62.3
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.9e-119 434.5 369 65.3
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-118 431.8 488 54.1
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 6.6e-109 399.4 654 37.0
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.0e-105 387.9 312 66.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.2e-103 379.0 450 52.2
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.7e-94 350.9 292 62.3
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.0e-90 335.9 333 57.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.9e-88 330.9 448 45.1
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 9.9e-81 305.8 324 55.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.0e-77 294.3 230 66.5
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.4e-74 284.6 280 62.1
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 7.6e-73 279.6 232 66.8
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-72 279.3 232 65.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-72 278.5 200 69.5
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.3e-69 268.1 939 28.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.2e-55 221.1 155 69.7
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.6e-52 211.5 200 59.5
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.3e-48 199.1 208 54.8
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-44 185.7 183 56.8
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.3e-35 153.7 157 56.7
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.4e-34 151.8 224 46.4
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 5.3e-34 150.6 604 26.2
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 7.0e-34 150.2 514 24.7
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.0e-32 146.4 171 52.6
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.0e-29 134.4 603 24.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-27 129.4 177 44.1
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.3e-27 127.1 152 53.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.4e-26 125.2 103 63.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.1e-26 124.8 126 59.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.0e-26 123.6 178 50.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 5.0e-24 117.5 124 57.3
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 5.0e-24 117.5 78 64.1
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 5.5e-23 114.0 131 54.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-20 105.1 111 51.4
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-19 102.8 118 49.2
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.7e-19 102.4 77 66.2
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.8e-13 80.5 203 40.4
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.0e-12 79.0 190 38.9
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 2.0e-12 79.0 97 53.6
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 3.4e-12 78.2 206 39.8
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.7e-11 75.9 94 47.9
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.9e-11 75.1 75 48.0
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 1.1e-10 73.2 91 46.2
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.4e-10 72.0 81 51.9
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.4e-10 72.0 60 60.0
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.4e-10 72.0 57 61.4
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 4.1e-10 71.2 62 58.1
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.9e-09 67.4 120 40.8
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 8.6e-08 63.5 46 65.2
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.9e-07 62.4 46 65.2
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.5e-07 62.0 46 65.2
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.5e-07 60.1 48 56.2
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 3.6e-06 58.2 92 42.4
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.7e-06 57.8 101 33.7


User provided reference genes

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