Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.1e-155 553.1 263 100.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.2e-128 463.4 261 81.2
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.4e-126 456.4 262 81.7
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.2e-125 453.4 262 82.4
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.6e-125 453.0 261 79.7
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.0e-124 450.3 257 81.7
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.3e-124 449.9 261 80.5
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.8e-124 449.5 257 81.3
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.8e-124 449.5 262 79.0
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 3.0e-124 448.7 258 81.4
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.0e-124 448.7 258 81.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.1e-124 448.0 258 80.6
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.1e-124 448.0 257 81.3
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 6.7e-124 447.6 263 79.5
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 8.7e-124 447.2 262 80.2
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.1e-123 446.8 262 79.0
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 4.3e-123 444.9 263 79.1
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 9.6e-123 443.7 260 79.6
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 9.6e-123 443.7 261 78.5
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.3e-122 443.4 263 79.1
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.3e-122 443.4 262 79.8
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.8e-122 441.4 262 79.4
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 4.8e-122 441.4 262 76.7
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 4.8e-122 441.4 263 78.3
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 6.2e-122 441.0 261 80.5
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 8.1e-122 440.7 257 77.4
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 8.1e-122 440.7 257 77.4
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 8.1e-122 440.7 252 80.6
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.1e-121 440.3 258 80.2
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.4e-121 439.9 262 79.8
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.4e-121 439.1 264 76.5
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.1e-121 438.7 262 78.6
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.0e-121 438.3 261 77.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 6.9e-121 437.6 262 75.6
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 6.9e-121 437.6 262 77.5
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.2e-120 436.8 259 78.4
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.2e-120 436.8 262 78.2
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.5e-120 436.4 261 77.0
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.5e-120 436.4 258 77.5
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.5e-120 436.4 261 76.2
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.0e-120 436.0 258 77.9
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.0e-120 436.0 273 73.3
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.3e-119 433.3 264 75.0
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.7e-119 433.0 262 77.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.7e-119 433.0 261 77.8
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.2e-119 432.6 261 75.9
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 2.9e-119 432.2 263 73.4
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 8.4e-119 430.6 261 77.4
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 8.4e-119 430.6 261 77.0
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-118 430.3 262 77.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.4e-118 429.9 262 76.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.9e-118 429.5 255 78.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.9e-118 429.5 263 77.6
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.5e-118 429.1 261 77.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 7.1e-118 427.6 262 77.5
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 9.3e-118 427.2 261 77.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 9.3e-118 427.2 262 74.4
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 9.3e-118 427.2 251 78.9
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.2e-117 426.8 266 74.8
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.2e-117 426.8 260 75.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.6e-117 426.4 265 76.2
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 2.1e-117 426.0 262 76.7
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.1e-117 426.0 262 77.1
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 2.7e-117 425.6 265 76.2
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 6.0e-117 424.5 265 75.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 7.9e-117 424.1 264 75.8
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 7.9e-117 424.1 261 75.5
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 3.0e-116 422.2 261 75.1
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-116 421.8 263 76.0
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.9e-116 421.8 257 77.0
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 6.7e-116 421.0 261 74.7
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.7e-116 421.0 261 77.4
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 8.7e-116 420.6 261 74.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 8.7e-116 420.6 251 76.5
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 8.7e-116 420.6 261 78.9
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.5e-115 419.9 261 76.2
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.5e-115 419.9 260 76.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 3.3e-115 418.7 261 74.3
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 3.3e-115 418.7 265 75.1
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.3e-115 418.3 261 76.6
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.3e-114 416.8 259 76.1
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.6e-114 416.4 263 70.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.8e-114 415.6 261 74.7
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.4e-113 413.3 268 74.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.4e-113 412.5 262 73.3
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.1e-113 412.1 250 74.4
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 5.3e-113 411.4 258 73.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 5.3e-113 411.4 261 72.0
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 3.4e-112 408.7 260 75.0
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.2e-111 406.0 254 74.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.0e-111 404.8 277 69.0
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-110 403.7 234 78.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.9e-110 402.9 265 72.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.5e-110 402.5 260 71.2
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.5e-110 402.5 275 69.5
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.6e-109 399.8 259 74.9
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.6e-109 398.3 250 72.4
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 7.9e-109 397.5 258 73.6
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.8e-108 396.4 261 71.3
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 6.7e-108 394.4 283 66.4
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 8.7e-108 394.0 230 76.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 7.4e-107 391.0 264 71.2
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 7.4e-107 391.0 275 67.6
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 8.2e-106 387.5 266 69.9
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 2.6e-104 382.5 258 72.5
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.8e-103 378.6 211 81.0
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 8.5e-103 377.5 218 78.9
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 4.2e-102 375.2 230 71.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.2e-101 373.6 230 72.2
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.1e-101 372.9 241 72.6
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.6e-99 365.9 236 72.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 9.7e-99 364.0 299 62.5
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.2e-98 362.8 211 77.7
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 2.6e-96 355.9 245 64.1
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.5e-96 355.1 224 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.7e-95 353.2 230 66.5
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.6e-93 345.5 225 66.7
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.7e-93 345.1 217 68.7
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 4.4e-91 338.6 194 77.8
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-90 335.9 221 70.6
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.1e-89 330.9 294 58.2
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.0e-88 329.7 262 63.4
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 6.5e-87 324.7 231 65.8
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.7e-82 310.1 324 52.2
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 8.2e-82 307.8 274 57.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.3e-81 305.1 162 79.6
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.7e-79 300.1 220 57.3
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.6e-77 292.4 170 80.6
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 8.0e-77 291.2 196 64.3
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 2.3e-71 273.1 163 76.1
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 5.9e-64 248.4 146 80.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 8.0e-61 238.0 163 68.1
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 8.0e-61 238.0 219 58.0
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.0e-60 236.1 139 73.4
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.2e-56 224.2 214 56.5
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.0e-53 211.5 126 71.4
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.1e-49 201.1 117 80.3
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-29 134.4 106 64.2
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.4e-27 125.9 82 73.2
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 1.4e-25 120.9 81 70.4
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 3.2e-25 119.8 72 75.0
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 8.7e-23 111.7 68 63.2
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.4e-20 104.4 65 67.7
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.8e-20 104.0 54 81.5
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 9.0e-20 101.7 66 72.7
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 7.1e-17 92.0 93 53.8
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.6e-16 89.4 64 68.8
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 5.6e-14 82.4 43 72.1
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.3e-13 81.3 84 51.2
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 2.6e-11 73.6 52 67.3
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 4.5e-11 72.8 76 47.4
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 9.9e-11 71.6 51 70.6
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.1e-09 68.2 47 72.3
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.1e-09 68.2 65 55.4
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.5e-09 65.9 52 61.5
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 8.7e-07 58.5 160 28.8


User provided reference genes

Program Settings