Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 0.0e+00 2538.8 1279 100.0
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 8.0e-106 389.8 1332 30.5
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 2.9e-95 354.8 1347 29.0
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.7e-92 345.5 1347 29.3
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.5e-88 332.4 1337 28.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.7e-87 328.9 1401 28.5
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.7e-87 328.9 1325 28.5
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.3e-84 319.3 1336 27.5
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.1e-83 316.2 1336 27.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-82 312.8 1336 27.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.2e-82 310.5 1337 28.4
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.8e-81 308.9 1336 29.1
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.6e-80 305.1 1341 29.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-80 304.7 1338 27.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 7.6e-80 303.5 1331 28.2
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.9e-79 301.6 1349 27.7
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.4e-79 300.4 1361 27.5
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.9e-78 298.9 1350 27.9
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 7.1e-78 297.0 1346 28.5
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 3.5e-77 294.7 1346 29.3
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 3.0e-76 291.6 1351 27.4
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 8.7e-76 290.0 1348 28.7
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-74 286.2 1335 28.6
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.6e-74 284.6 1319 27.1
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 4.7e-74 284.3 1361 28.1
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 6.2e-74 283.9 1357 28.3
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.1e-73 281.6 1330 27.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-72 279.3 1331 28.1
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.9e-70 272.3 1292 26.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.5e-67 261.9 1308 27.1
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.3e-67 261.2 1390 25.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.8e-57 229.2 1329 25.4
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.6e-56 225.3 1386 25.8
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.7e-53 215.3 1387 24.9
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.5e-51 209.5 1321 26.7
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.1e-49 201.8 1274 26.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 5.8e-48 197.6 1378 25.3
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.2e-47 195.7 1276 24.2
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.6e-45 189.5 1317 25.1
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.0e-44 186.8 1298 25.3
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.3e-44 186.4 1309 24.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 8.7e-44 183.7 1274 26.1
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-43 183.3 1468 23.9
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 4.3e-43 181.4 856 27.0
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.6e-42 179.5 1335 24.8
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.8e-42 178.7 1292 24.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 3.7e-42 178.3 1301 24.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.4e-41 175.6 1293 24.7
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.1e-41 175.3 1289 24.5
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 5.9e-40 171.0 1311 24.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.9e-39 168.7 1345 24.8
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 3.8e-39 168.3 1123 27.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.2e-38 164.9 1281 24.2
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 7.2e-38 164.1 1338 25.6
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 3.6e-37 161.8 1264 24.7
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 3.6e-37 161.8 1316 24.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.8e-36 159.5 965 25.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 5.1e-36 157.9 1282 24.7
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 5.1e-36 157.9 1300 23.9
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 8.8e-36 157.1 1315 22.9
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.5e-35 156.4 1255 23.7
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 5.7e-35 154.5 1271 24.1
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 9.7e-35 153.7 1268 23.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 9.7e-35 153.7 1306 25.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-34 153.3 1261 24.3
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.8e-34 152.1 1276 23.9
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.8e-34 152.1 1328 24.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.7e-34 151.8 1343 24.5
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.4e-33 149.1 1325 23.5
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.1e-33 148.3 1325 23.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.6e-32 145.6 1329 24.1
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.3e-31 143.3 1313 24.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.9e-31 142.1 1194 24.4
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 2.9e-31 142.1 1323 23.8
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.5e-31 141.0 1285 23.7
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.5e-30 139.0 745 27.5
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.8e-28 132.9 1281 23.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-28 132.1 1297 23.7
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.0e-27 129.4 1296 24.4
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 5.7e-27 127.9 1385 22.7
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 5.7e-27 127.9 1341 23.0
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 9.7e-27 127.1 1254 24.1
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.3e-26 126.7 1254 24.4
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 4.8e-26 124.8 1268 22.5
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 8.2e-26 124.0 389 30.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.4e-25 123.2 491 28.1
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.1e-25 122.1 1221 22.8
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.5e-24 119.8 1251 22.4
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 4.5e-24 118.2 1324 23.5
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.5e-24 118.2 577 27.9
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 7.7e-24 117.5 1243 23.8
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.0e-23 117.1 1248 22.7
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.3e-23 116.7 1248 24.2
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.3e-23 116.7 1248 24.2
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.3e-23 116.7 1248 22.9
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 3.8e-23 115.2 1325 22.5
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 4.2e-22 111.7 1303 23.4
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 5.5e-22 111.3 1259 23.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 7.2e-22 110.9 1315 23.7
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 3.6e-21 108.6 1268 24.3
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.3e-19 102.1 1259 23.2
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 8.2e-18 97.4 1333 22.1
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.4e-17 96.7 1273 22.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.2e-16 93.6 580 28.1
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.2e-16 93.6 580 28.1
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.2e-16 93.6 580 28.1
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.6e-16 93.2 1267 22.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.5e-16 92.0 85 56.5
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 4.5e-16 91.7 136 39.0
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.7e-15 89.7 118 39.8
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.7e-15 89.7 503 26.2
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.0e-15 88.2 101 43.6
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 5.0e-15 88.2 198 31.8
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.5e-15 87.8 358 27.4
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.5e-15 87.4 358 27.4
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.5e-14 85.9 811 23.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 4.2e-14 85.1 572 27.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.5e-14 84.7 130 39.2
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 7.2e-14 84.3 480 26.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 7.2e-14 84.3 101 44.6
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.4e-14 84.0 358 27.1
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.2e-13 83.6 1253 21.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.7e-13 82.4 101 41.6
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 6.1e-13 81.3 85 48.2
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.0e-12 80.5 63 54.0
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.4e-12 80.1 94 42.6
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-12 80.1 325 27.1
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-12 80.1 400 24.5
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-12 79.3 639 23.5
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.3e-12 79.3 280 29.3
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-12 79.0 165 31.5
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.0e-12 78.6 281 30.6
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 5.2e-12 78.2 115 34.8
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 5.2e-12 78.2 546 25.1
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 6.7e-12 77.8 494 25.1
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.5e-11 76.6 87 37.9
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 2.0e-11 76.3 263 28.5
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.0e-11 76.3 117 39.3
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.0e-11 76.3 116 41.4
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.0e-11 76.3 100 42.0
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 3.3e-11 75.5 191 33.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 4.4e-11 75.1 1283 22.0
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.4e-11 75.1 79 38.0
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.4e-11 75.1 122 36.9
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 5.7e-11 74.7 78 41.0
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.3e-10 73.6 127 34.6
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.3e-10 73.6 1280 20.9
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.7e-10 73.2 109 39.4
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 6.3e-10 71.2 88 43.2
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 6.3e-10 71.2 70 40.0
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.4e-09 70.1 335 24.2
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 2.4e-09 69.3 100 41.0
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.1e-09 68.9 153 30.1
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.1e-09 68.6 106 38.7
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 4.1e-09 68.6 512 24.8
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 7.0e-09 67.8 106 37.7
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.0e-09 67.8 1150 21.0
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 9.1e-09 67.4 134 35.8
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 1.2e-08 67.0 71 42.3
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 1.2e-08 67.0 264 28.0
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 3.5e-08 65.5 62 45.2
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 4.5e-08 65.1 270 25.2
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 2.9e-07 62.4 127 33.9
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.8e-07 62.0 180 28.3
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 3.8e-07 62.0 59 47.5
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 5.0e-07 61.6 72 41.7
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 8.5e-07 60.8 600 23.2
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.9e-06 59.7 578 22.3
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 5.5e-06 58.2 96 36.5
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 7.2e-06 57.8 229 28.8


User provided reference genes

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