Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 2.7e-222 775.0 388 100.0
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 2.0e-177 625.9 392 80.4
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 7.0e-170 600.9 394 76.4
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 1.0e-168 597.0 391 76.7
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 8.5e-168 594.0 388 76.3
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 1.1e-167 593.6 388 76.3
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 1.4e-167 593.2 390 76.7
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 2.1e-166 589.3 389 75.3
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 4.7e-166 588.2 391 77.0
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 8.0e-166 587.4 393 77.4
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.0e-165 587.0 388 76.3
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.8e-165 586.3 392 74.7
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 2.3e-165 585.9 388 75.5
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 6.7e-165 584.3 388 76.3
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 6.7e-165 584.3 388 76.3
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 8.8e-165 583.9 392 77.3
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.4e-164 581.6 388 76.8
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 4.4e-164 581.6 393 74.3
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 7.4e-164 580.9 394 74.4
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 7.4e-164 580.9 394 74.4
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 9.7e-164 580.5 393 74.8
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.3e-163 580.1 388 76.5
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 1.7e-163 579.7 394 74.9
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 2.8e-163 578.9 392 74.2
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 6.3e-163 577.8 392 73.7
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.2e-163 577.4 388 76.3
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.1e-162 577.0 388 74.7
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 5.3e-162 574.7 390 74.9
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 7.0e-162 574.3 395 72.9
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 9.1e-162 573.9 390 74.1
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 2.0e-161 572.8 391 73.4
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 2.6e-161 572.4 393 73.3
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.3e-160 570.1 408 71.1
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 2.9e-160 568.9 383 74.2
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.8e-160 568.5 391 73.7
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 6.5e-160 567.8 390 74.1
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 8.5e-160 567.4 399 71.7
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 8.5e-160 567.4 394 74.1
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 8.5e-160 567.4 394 74.1
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 1.1e-159 567.0 400 73.0
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.5e-159 566.6 394 73.4
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.5e-159 565.8 392 74.2
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.5e-159 565.8 392 74.2
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 2.7e-158 562.4 394 72.6
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 4.7e-158 561.6 390 71.5
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 1.0e-157 560.5 391 72.9
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.0e-157 560.5 396 73.0
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.8e-157 559.7 393 73.0
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 3.0e-157 558.9 394 71.1
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 1.2e-156 557.0 389 71.5
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 5.7e-156 554.7 402 71.1
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 2.2e-155 552.7 388 71.1
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 2.2e-155 552.7 399 69.9
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 3.7e-155 552.0 388 71.4
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 1.4e-154 550.1 299 86.0
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 1.8e-154 549.7 389 71.2
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 1.8e-154 549.7 391 69.1
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 2.4e-154 549.3 389 71.2
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 3.1e-154 548.9 375 73.9
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 5.3e-154 548.1 389 71.0
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 9.1e-154 547.4 388 70.6
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 2.0e-153 546.2 375 73.3
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 3.5e-153 545.4 399 69.2
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 1.0e-152 543.9 390 70.0
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.7e-152 543.1 379 72.6
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 3.8e-152 542.0 440 65.2
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.2e-150 537.0 388 70.4
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 1.2e-150 537.0 390 67.9
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-150 536.6 393 70.0
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.1e-150 536.2 387 70.5
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 8.0e-150 534.3 397 70.0
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 6.8e-149 531.2 470 61.9
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 3.4e-148 528.9 386 69.7
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 2.2e-147 526.2 391 69.3
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 6.3e-147 524.6 388 68.6
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 1.7e-144 516.5 398 65.3
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 8.6e-144 514.2 492 58.3
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 1.0e-141 507.3 388 67.3
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 5.2e-141 505.0 392 65.1
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 1.5e-140 503.4 389 66.1
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 1.7e-139 500.0 389 66.6
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.8e-139 499.2 283 82.0
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 4.9e-139 498.4 389 65.8
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 8.3e-139 497.7 355 67.6
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.1e-138 497.3 432 62.3
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 5.4e-138 495.0 389 66.3
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.1e-135 487.3 400 63.8
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.4e-133 480.3 389 63.0
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.8e-133 479.9 388 64.7
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 6.8e-133 478.0 410 62.4
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.4e-132 475.3 281 80.1
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 2.9e-131 472.6 296 75.3
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 3.7e-131 472.2 304 71.1
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.0e-130 468.0 400 61.5
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.5e-129 465.7 400 61.2
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 9.2e-122 441.0 368 62.8
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.8e-117 426.8 391 60.9
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.4e-114 417.2 329 67.5
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 6.8e-109 398.3 228 81.6
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.1e-103 380.9 293 60.4
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 4.3e-103 379.0 337 55.8
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 4.8e-102 375.6 213 82.2
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 4.8e-102 375.6 213 82.2
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 4.8e-102 375.6 213 82.2
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 6.4e-99 365.2 325 54.2
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 7.1e-98 361.7 227 73.6
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.6e-97 360.5 263 69.6
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 1.5e-95 354.0 213 77.0
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 6.2e-94 348.6 322 53.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 3.7e-86 322.8 292 59.2
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 7.1e-82 308.5 290 50.3
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.9e-79 300.4 230 65.2
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 1.4e-77 294.3 304 47.7
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 7.1e-74 282.0 285 47.7
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.0e-72 278.1 177 73.4
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 8.2e-70 268.5 157 84.1
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 5.9e-68 262.3 278 45.7
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 2.0e-60 237.3 135 83.0
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 7.2e-42 175.6 174 57.5
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 5.2e-40 169.5 161 49.7
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 9.8e-39 165.2 108 68.5
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 3.2e-34 150.2 108 65.7
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 6.8e-32 142.5 97 67.0
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.3e-30 136.0 174 47.1
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 4.0e-24 116.7 87 59.8
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 1.6e-20 104.8 64 73.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 1.8e-16 91.3 48 83.3
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 1.8e-16 91.3 48 83.3
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.0e-11 75.5 113 43.4
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 6.8e-08 62.8 41 70.7
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 4.9e-06 56.6 43 60.5


User provided reference genes

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