Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 1.4e-26 122.5 73 100.0
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 1.0e-13 79.7 70 65.7
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 3.9e-13 77.8 72 62.5
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 3.9e-13 77.8 72 62.5
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 3.9e-13 77.8 72 62.5
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 5.0e-13 77.4 64 73.4
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 6.6e-13 77.0 64 60.9
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 8.6e-13 76.6 65 70.8
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 1.9e-12 75.5 67 64.2
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 1.9e-12 75.5 67 64.2
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.5e-12 75.1 68 61.8
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 2.5e-12 75.1 65 70.8
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 3.3e-12 74.7 69 59.4
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 4.3e-12 74.3 67 62.7
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 5.6e-12 73.9 68 58.8
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 5.6e-12 73.9 67 62.7
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 7.3e-12 73.6 68 63.2
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 9.5e-12 73.2 71 57.7
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 9.5e-12 73.2 63 71.4
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 9.5e-12 73.2 64 76.6
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 1.6e-11 72.4 70 57.1
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 1.6e-11 72.4 64 62.5
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 2.1e-11 72.0 64 65.6
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 2.8e-11 71.6 64 75.0
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 3.6e-11 71.2 64 75.0
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 4.7e-11 70.9 71 54.9
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 4.7e-11 70.9 74 56.8
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 6.1e-11 70.5 64 75.0
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 8.0e-11 70.1 64 73.4
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 8.0e-11 70.1 68 52.9
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 8.0e-11 70.1 68 52.9
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 1.0e-10 69.7 71 56.3
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.8e-10 68.9 64 60.9
BcaC04g20800 Brassica carinata HOM05D013032 ORTHO05D009821 2.3e-10 68.6 71 53.5
A10p08350 Brassica napus HOM05D013032 ORTHO05D009821 2.3e-10 68.6 71 53.5
BolC9t56782H Brassica oleracea HOM05D013032 ORTHO05D009821 2.3e-10 68.6 71 53.5
BraSC37t46169Z Brassica rapa HOM05D013032 ORTHO05D009821 2.3e-10 68.6 71 53.5
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 2.3e-10 68.6 71 52.1
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 3.1e-10 68.2 73 67.1
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 4.0e-10 67.8 71 52.1
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 4.0e-10 67.8 63 65.1
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 5.2e-10 67.4 68 63.2
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 8.9e-10 66.6 70 52.9
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 1.2e-09 66.2 70 64.3
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 1.5e-09 65.9 71 52.1
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 1.5e-09 65.9 70 54.3
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 1.5e-09 65.9 41 80.5
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 2.0e-09 65.5 68 58.8
Thhalv10015187m.g Eutrema salsugineum HOM05D013032 ORTHO05D009821 2.0e-09 65.5 71 52.1
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.0e-09 65.5 66 59.1
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 2.6e-09 65.1 64 68.8
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 2.6e-09 65.1 63 63.5
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 3.4e-09 64.7 65 58.5
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 5.8e-09 63.9 69 53.6
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 7.5e-09 63.5 64 57.8
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.3e-08 62.8 69 55.1
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 1.7e-08 62.4 50 62.0
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 1.7e-08 62.4 41 75.6
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.7e-08 62.4 35 85.7
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 2.9e-08 61.6 44 72.7
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 2.9e-08 61.6 75 61.3
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 6.4e-08 60.5 63 52.4
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 6.4e-08 60.5 63 52.4
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.3e-08 60.1 71 63.4
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.3e-08 60.1 71 63.4
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 1.4e-07 59.3 71 47.9
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 1.4e-07 59.3 72 59.7
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 2.4e-07 58.5 81 44.4
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 2.4e-07 58.5 38 71.1
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 2.4e-07 58.5 70 48.6
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 3.2e-07 58.2 68 48.5
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 3.2e-07 58.2 71 60.6
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 4.1e-07 57.8 70 60.0
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 4.1e-07 57.8 64 53.1
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 4.1e-07 57.8 61 59.0
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 5.4e-07 57.4 69 53.6
Aa31LG3G5840 Aethionema arabicum HOM05D013032 ORTHO05D009821 7.0e-07 57.0 63 57.1
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 7.0e-07 57.0 71 59.2
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 9.2e-07 56.6 33 81.8
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 3.5e-06 54.7 42 71.4
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 3.5e-06 54.7 67 50.7
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 4.6e-06 54.3 43 65.1
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 4.6e-06 54.3 56 53.6
Lsat_1_v5_gn_4_99100 Lactuca sativa HOM05D007996 ORTHO05D009821 6.0e-06 53.9 68 47.1
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 6.0e-06 53.9 67 49.3
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 6.0e-06 53.9 70 61.4
unitig_22.g6269 Utricularia gibba HOM05D007996 ORTHO05D009821 7.8e-06 53.5 64 46.9


User provided reference genes

Program Settings