Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.1e-214 749.6 366 100.0
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.2e-187 659.8 369 88.3
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.5e-185 652.9 365 87.1
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.2e-185 651.7 367 85.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.8e-183 646.0 362 84.5
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.3e-183 645.6 362 85.9
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.2e-182 643.3 362 85.1
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.5e-182 642.9 366 85.5
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.2e-181 639.0 366 85.2
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.8e-181 638.6 366 84.7
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.3e-181 637.5 365 83.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 6.3e-181 637.5 369 84.8
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.1e-180 636.7 364 83.8
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 9.1e-180 633.6 366 84.2
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.0e-178 627.9 367 82.0
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.5e-178 627.5 367 81.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.5e-178 627.5 367 81.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.5e-177 626.3 356 85.1
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.9e-177 625.9 364 82.4
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 5.5e-177 624.4 366 81.1
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 7.2e-177 624.0 366 82.0
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.2e-177 624.0 366 82.5
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 9.4e-177 623.6 364 81.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.4e-177 623.6 367 82.6
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.6e-176 622.9 364 83.2
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.7e-176 622.1 364 82.1
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.7e-176 621.3 364 81.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.0e-175 620.2 364 81.9
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.8e-175 619.4 369 80.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.8e-175 619.4 362 80.4
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 3.0e-175 618.6 362 82.6
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.0e-175 618.6 366 82.0
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 4.0e-175 618.2 389 77.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 5.2e-175 617.8 366 81.7
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 5.2e-175 617.8 366 81.7
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 5.2e-175 617.8 362 82.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.5e-174 616.3 364 81.6
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.0e-174 615.9 364 81.6
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.4e-174 615.1 364 81.6
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.4e-174 614.8 364 81.0
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 4.4e-174 614.8 367 80.1
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.7e-174 614.4 364 81.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.3e-173 613.2 365 81.4
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.7e-173 612.8 362 81.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.7e-173 612.8 366 80.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.7e-173 612.8 362 81.8
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.7e-173 612.8 365 81.4
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.7e-173 612.8 362 81.8
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.8e-173 612.1 366 80.1
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.8e-173 612.1 366 80.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.8e-173 612.1 362 81.2
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.8e-173 612.1 360 82.2
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 3.7e-173 611.7 366 80.9
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 4.9e-173 611.3 365 80.3
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 8.3e-173 610.5 364 81.6
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.1e-172 610.1 366 79.5
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 3.1e-172 608.6 362 81.5
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 3.1e-172 608.6 365 79.7
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 5.4e-172 607.8 362 81.2
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 9.1e-172 607.1 359 81.6
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.0e-171 605.9 366 79.5
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 3.5e-171 605.1 364 80.8
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 4.5e-171 604.7 366 79.2
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 5.9e-171 604.4 366 79.0
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 7.7e-171 604.0 366 78.7
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.3e-170 603.2 361 80.9
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.7e-170 602.8 366 79.2
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.3e-170 602.4 366 77.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.9e-170 602.1 362 80.9
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.8e-170 601.7 364 79.4
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.1e-169 600.1 362 80.4
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 2.5e-169 599.0 361 80.3
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.2e-168 596.7 366 78.1
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.6e-168 596.3 362 79.6
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.1e-168 595.9 362 79.6
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 8.0e-168 594.0 362 79.0
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 8.0e-168 594.0 366 77.0
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.0e-167 593.6 366 78.4
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.4e-167 593.2 361 79.5
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.8e-167 592.8 364 77.5
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 5.2e-167 591.3 370 75.4
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.5e-166 589.7 440 69.8
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 2.6e-166 589.0 370 75.4
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.3e-165 586.6 366 76.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.3e-165 586.6 394 73.4
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.9e-165 585.5 362 77.9
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.7e-163 578.9 360 77.8
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.5e-163 578.6 367 74.1
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.6e-163 578.2 456 64.9
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.9e-163 577.8 362 77.9
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.0e-162 577.0 418 70.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.0e-162 577.0 360 76.7
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 2.3e-162 575.9 360 76.9
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.2e-160 570.1 362 76.8
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.3e-159 565.8 357 75.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.5e-158 563.1 368 73.4
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 9.8e-158 560.5 459 62.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.9e-157 558.1 334 81.4
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.6e-155 553.1 358 73.2
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 6.0e-155 551.2 356 74.4
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 8.6e-154 547.4 360 71.7
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.6e-152 543.1 360 71.4
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.6e-152 543.1 360 70.3
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.2e-151 538.1 360 70.6
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 6.8e-151 537.7 390 71.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-150 536.6 363 68.3
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.1e-148 530.4 372 68.3
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.1e-148 528.5 360 69.2
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.7e-147 525.8 362 69.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.3e-145 518.5 361 67.6
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.5e-142 510.0 519 53.4
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.3e-141 506.9 274 88.3
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.6e-139 498.4 365 63.3
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 6.6e-138 494.6 359 64.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 4.6e-131 471.9 270 83.0
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.5e-129 466.1 255 86.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.3e-129 465.3 347 69.2
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.2e-123 447.2 385 56.9
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.1e-116 424.1 277 74.7
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.9e-109 399.4 349 57.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.7e-104 382.5 351 55.0
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.9e-102 375.2 241 71.4
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 7.2e-100 368.2 356 50.8
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.4e-86 322.8 203 76.8
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 3.8e-85 319.3 227 67.0
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 4.7e-83 312.4 271 60.9
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.0e-79 298.5 182 81.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.2e-78 297.7 161 87.0
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 5.0e-77 292.4 176 76.7
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 5.0e-77 292.4 164 84.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.3e-69 267.7 355 44.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.1e-68 264.6 186 70.4
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 6.5e-61 238.8 178 64.6
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.0e-53 214.9 118 86.4
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.3e-48 198.0 169 62.1
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.3e-45 187.2 106 80.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.3e-36 156.4 90 82.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.6e-36 156.0 107 72.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.1e-27 127.5 185 43.8
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 4.0e-26 123.2 91 67.0
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 6.6e-21 105.9 112 54.5
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.9e-20 104.4 77 63.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 8.1e-19 99.0 55 80.0
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.4e-18 98.2 62 71.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.1e-18 97.1 232 29.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.4e-17 93.2 86 57.0
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 7.1e-15 85.9 48 83.3
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 6.6e-13 79.3 47 74.5
BcaC09g49746 Brassica carinata HOM05D001438 ORTHO05D001336 8.4e-08 62.4 330 22.7
C01p33350 Brassica napus HOM05D001438 ORTHO05D001336 1.1e-07 62.0 330 22.7
A01p26330 Brassica napus HOM05D001438 ORTHO05D001336 1.4e-07 61.6 330 22.7
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.4e-07 61.6 74 44.6
BolC1t03277H Brassica oleracea HOM05D001438 ORTHO05D001336 2.4e-07 60.8 330 22.4
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 4.2e-07 60.1 93 41.9
Gorai.004G196400 Gossypium raimondii HOM05D001438 ORTHO05D001336 7.1e-07 59.3 218 22.9
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 1.2e-06 58.5 43 58.1
BcaB05g23632 Brassica carinata HOM05D001438 ORTHO05D001336 2.1e-06 57.8 215 23.3
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 7.9e-06 55.8 265 24.2


User provided reference genes

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