Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 2.8e-272 941.4 505 100.0
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 4.0e-210 734.9 495 79.8
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 3.8e-200 701.8 503 74.8
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 4.2e-199 698.4 501 75.0
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 3.9e-197 691.8 505 74.5
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 1.1e-196 690.3 501 72.3
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 1.9e-196 689.5 507 73.6
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 4.8e-195 684.9 499 73.5
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 3.1e-194 682.2 495 74.3
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 3.1e-194 682.2 503 72.6
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 4.0e-194 681.8 498 73.3
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 2.0e-193 679.5 494 74.9
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 3.4e-193 678.7 508 72.8
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 9.9e-193 677.2 494 74.7
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 3.8e-192 675.2 504 71.8
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 6.4e-192 674.5 505 72.1
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 5.5e-191 671.4 503 72.2
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 2.1e-190 669.5 499 72.3
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 4.6e-190 668.3 495 73.1
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 6.0e-190 667.9 503 72.0
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 6.7e-189 664.5 505 71.3
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 4.3e-188 661.8 513 70.8
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 1.3e-187 660.2 501 70.1
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 4.8e-187 658.3 504 70.6
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 5.8e-185 651.4 503 71.0
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 7.6e-185 651.0 498 71.3
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 1.3e-184 650.2 500 70.6
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 2.9e-184 649.0 507 70.4
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 3.8e-184 648.7 500 70.8
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 8.4e-184 647.5 503 71.2
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 2.5e-183 646.0 503 70.0
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 3.2e-183 645.6 503 71.0
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 2.3e-181 639.4 503 70.0
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 2.3e-181 639.4 503 70.8
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 3.0e-181 639.0 495 69.7
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 3.9e-181 638.6 503 69.4
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 6.7e-181 637.9 484 72.7
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 3.3e-180 635.6 496 71.2
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 3.3e-180 635.6 498 69.9
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 1.3e-179 633.6 502 68.9
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 1.3e-179 633.6 506 69.0
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 2.8e-179 632.5 497 68.8
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 8.2e-179 630.9 506 68.8
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 1.8e-178 629.8 496 69.6
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 1.8e-178 629.8 499 69.1
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 4.5e-177 625.2 498 68.9
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 5.9e-177 624.8 566 63.4
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.0e-176 624.0 496 68.3
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.0e-176 624.0 504 69.6
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 3.8e-176 622.1 495 67.7
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 3.8e-176 622.1 496 68.5
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 3.2e-175 619.0 496 68.1
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 4.2e-175 618.6 505 67.9
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 4.2e-175 618.6 499 69.3
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 5.5e-175 618.2 498 67.5
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 9.3e-175 617.5 501 67.9
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 3.5e-174 615.5 490 69.2
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 7.9e-174 614.4 509 66.4
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 1.3e-171 607.1 439 77.2
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 2.8e-171 605.9 525 64.2
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 9.0e-170 600.9 491 67.2
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 4.5e-169 598.6 501 64.7
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.0e-168 597.4 501 66.5
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 6.5e-168 594.7 506 65.2
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 5.5e-167 591.7 496 64.7
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 9.4e-167 590.9 476 69.3
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.6e-166 590.1 505 65.1
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 7.9e-166 587.8 459 72.5
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 8.2e-163 577.8 522 62.1
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 6.9e-162 574.7 552 60.3
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 2.0e-161 573.2 475 69.3
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.9e-159 566.6 458 69.7
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 6.1e-158 561.6 496 62.9
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 2.3e-157 559.7 499 62.7
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 4.4e-156 555.4 410 75.6
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 2.0e-153 546.6 470 66.0
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.7e-152 543.5 522 60.9
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.7e-152 543.5 457 66.7
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 2.9e-152 542.7 507 62.1
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.9e-151 540.0 453 67.3
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 1.4e-149 533.9 411 71.8
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 2.2e-147 526.6 468 63.0
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 6.3e-147 525.0 472 64.2
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 4.7e-142 508.8 434 65.0
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 2.3e-141 506.5 491 59.5
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 6.3e-131 471.9 380 66.8
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 6.8e-125 451.8 364 69.0
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 8.0e-118 428.3 329 69.9
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.8e-109 400.6 507 51.9
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.8e-101 374.0 377 56.2
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 9.2e-98 361.7 326 62.9
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 2.8e-94 350.1 511 44.2
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 3.1e-93 346.7 294 65.0
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 7.8e-89 332.0 256 69.5
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 2.3e-80 303.9 234 70.9
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 9.9e-76 288.5 257 64.6
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 1.8e-69 267.7 242 64.9
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 7.6e-68 262.3 213 62.9
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 6.0e-65 252.7 169 76.9
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 3.4e-60 236.9 155 76.1
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 3.2e-58 230.3 205 61.5
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 1.2e-52 211.8 156 69.2
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 1.7e-51 208.0 168 70.2
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 5.0e-43 179.9 183 56.3
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 1.5e-39 168.3 144 67.4
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 2.2e-35 154.5 492 28.9
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 7.2e-34 149.4 161 52.8
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 4.8e-30 136.7 92 80.4
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 1.1e-29 135.6 92 80.4
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 5.9e-28 129.8 87 77.0
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 3.8e-27 127.1 92 76.1
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 1.0e-24 119.0 72 87.5
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.6e-23 114.4 77 75.3
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.7e-20 104.4 111 55.9
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 7.7e-20 102.8 68 69.1
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 2.9e-19 100.9 73 74.0
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.5e-15 86.3 58 77.6
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 2.8e-14 84.3 57 78.9
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 2.1e-09 68.2 42 73.8
Prupe.2G262300 Prunus persica HOM05D006817 ORTHO05D008603 5.2e-08 63.5 90 48.9


User provided reference genes

Program Settings