Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 6.0e-161 570.9 301 100.0
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 5.9e-100 368.2 298 66.4
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 6.3e-94 348.2 246 70.3
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.8e-93 346.7 251 69.7
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 2.4e-93 346.3 238 71.0
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 3.1e-93 345.9 271 65.3
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 3.1e-93 345.9 230 74.3
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.3e-93 345.1 271 64.2
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.0e-92 343.2 295 62.7
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 1.0e-91 340.9 228 73.7
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.3e-91 340.5 248 69.4
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 1.7e-91 340.1 230 73.5
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.7e-91 340.1 232 72.0
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.9e-91 339.3 230 72.6
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 5.0e-91 338.6 230 72.6
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 6.5e-91 338.2 234 70.9
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 8.5e-91 337.8 229 72.9
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 5.5e-90 335.1 230 70.4
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.2e-90 334.7 228 72.8
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.2e-89 334.0 287 62.4
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.6e-89 333.6 238 70.6
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.6e-89 332.4 230 71.3
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 4.7e-89 332.0 230 70.9
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.7e-89 332.0 229 71.6
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 6.1e-89 331.6 230 71.7
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.4e-88 330.5 228 71.9
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 2.3e-88 329.7 229 72.5
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.3e-88 329.7 237 68.8
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 3.0e-88 329.3 283 62.5
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 3.0e-88 329.3 230 70.0
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 4.0e-88 328.9 298 59.4
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 8.8e-88 327.8 279 62.4
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 1.5e-87 327.0 226 71.2
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 3.3e-87 325.9 230 70.4
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 8.2e-86 321.2 285 61.4
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.4e-85 320.5 227 68.3
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 1.8e-85 320.1 230 69.1
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.1e-85 319.3 226 69.0
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 4.1e-85 318.9 229 69.9
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 5.3e-85 318.5 229 69.4
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 1.6e-84 317.0 232 68.1
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 2.0e-84 316.6 228 68.4
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 2.0e-84 316.6 230 69.6
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.0e-84 316.6 264 61.0
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 3.5e-84 315.8 239 66.5
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.5e-84 315.8 257 61.9
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 5.9e-84 315.1 257 64.6
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 7.7e-84 314.7 227 68.3
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.7e-83 313.5 229 69.0
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 2.9e-83 312.8 231 67.1
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.9e-83 312.8 229 65.9
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 3.8e-83 312.4 230 68.3
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 6.5e-83 311.6 272 59.2
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.1e-82 310.8 264 62.5
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.1e-82 310.8 232 65.9
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.5e-82 310.5 227 66.5
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.5e-82 310.5 250 63.6
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.5e-82 310.5 230 66.5
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.5e-82 309.7 231 68.0
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 3.2e-82 309.3 230 67.0
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 5.5e-82 308.5 238 66.4
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 7.2e-82 308.1 230 67.4
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.2e-81 307.4 256 62.9
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.6e-81 307.0 256 62.5
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.1e-81 306.6 230 65.2
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.6e-81 305.8 230 65.7
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.7e-81 305.4 294 56.5
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 6.1e-81 305.1 229 66.4
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 6.1e-81 305.1 285 56.5
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 6.1e-81 305.1 227 67.8
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 8.0e-81 304.7 229 66.4
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.8e-80 303.5 229 66.4
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 2.3e-80 303.1 295 57.3
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.3e-80 303.1 229 66.4
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.3e-80 303.1 230 63.9
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 8.8e-80 301.2 285 56.5
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.2e-79 300.8 292 56.5
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 4.4e-79 298.9 274 58.0
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 5.7e-79 298.5 230 63.9
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 9.8e-79 297.7 230 63.5
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.3e-78 297.4 232 63.4
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.3e-78 297.4 231 65.4
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.3e-78 297.4 228 64.9
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.7e-78 297.0 232 64.2
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.7e-78 297.0 229 64.2
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.7e-78 297.0 227 64.3
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 2.8e-78 296.2 230 63.9
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 6.3e-78 295.0 212 68.9
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.1e-77 294.3 201 73.1
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.8e-77 293.5 228 63.6
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.8e-77 293.5 228 63.6
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.8e-77 293.5 274 56.6
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.0e-76 290.0 229 63.3
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 3.5e-76 289.3 229 63.8
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 7.7e-76 288.1 234 62.4
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.7e-75 287.0 229 62.9
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.3e-75 286.6 234 62.4
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.9e-75 286.2 229 62.4
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.5e-74 283.1 252 59.9
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 2.5e-74 283.1 228 60.5
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 3.3e-74 282.7 277 55.6
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 4.2e-74 282.3 230 62.6
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.1e-73 280.0 201 69.2
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 8.0e-73 278.1 256 58.2
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 8.0e-73 278.1 267 54.7
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 4.0e-72 275.8 282 51.8
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 4.0e-72 275.8 231 62.8
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.2e-72 275.4 238 60.9
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.8e-72 275.0 278 55.0
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.5e-71 273.9 207 64.7
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.6e-71 273.1 215 64.2
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 8.3e-70 268.1 291 50.9
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 2.7e-68 263.1 196 63.8
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 5.6e-66 255.4 257 53.7
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.2e-65 254.2 181 71.3
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.8e-64 250.4 252 55.6
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 7.5e-63 245.0 186 65.1
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.7e-62 242.7 291 49.5
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 6.4e-62 241.9 232 55.2
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.0e-61 238.4 264 49.6
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.2e-60 237.7 273 51.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 3.5e-60 236.1 228 53.5
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 5.0e-59 232.3 230 52.6
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 4.3e-58 229.2 238 52.5
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 7.3e-58 228.4 144 77.1
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 9.5e-58 228.0 163 67.5
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 4.7e-57 225.7 231 54.1
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 8.0e-57 224.9 143 76.2
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 8.0e-57 224.9 233 49.8
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.1e-56 224.6 146 74.0
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-53 214.5 169 63.9
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.1e-51 205.7 276 47.1
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 3.1e-48 196.4 152 64.5
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.4e-45 187.6 155 58.7
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 2.4e-45 186.8 219 45.7
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.8e-44 181.8 177 55.9
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 9.5e-42 174.9 163 53.4
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.6e-41 172.9 166 53.6
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.9e-38 162.5 135 57.0
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.5e-36 156.4 129 58.1
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.6e-33 147.5 96 72.9
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.2e-30 137.1 212 39.2
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.1e-26 124.8 96 65.6
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.1e-24 116.7 113 58.4
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.9e-22 109.4 181 42.0
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 2.4e-21 107.1 245 32.2
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 3.2e-21 106.7 119 50.4
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 4.2e-21 106.3 74 71.6
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 3.5e-20 103.2 242 35.1
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.7e-14 84.3 61 63.9
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.2e-07 61.6 179 33.0


User provided reference genes

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