Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0236 Punica granatum HOM05D001431 ORTHO05D001268 6.0e-85 317.4 151 100.0
Sabra06G0202700 Salix brachista HOM05D001431 ORTHO05D001268 4.1e-17 92.0 142 42.3
Duzib187G1968 Durio zibethinus HOM05D001431 ORTHO05D001268 3.5e-16 89.0 142 42.3
Eucgr.C02729 Eucalyptus grandis HOM05D001431 ORTHO05D001268 7.7e-16 87.8 125 46.4
Potri.006G259300 Populus trichocarpa HOM05D001431 ORTHO05D001268 6.5e-15 84.7 145 40.7
Gorai.010G117000 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.1e-14 84.0 156 39.1
Eucgr.C02728 Eucalyptus grandis HOM05D001431 ORTHO05D001268 2.5e-14 82.8 108 46.3
Gohir.D06G102000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 8.0e-13 77.8 156 37.2
Ciclev10010338m.g Citrus clementina HOM05D001431 ORTHO05D001268 1.8e-12 76.6 137 35.8
Duzib168G0286 Durio zibethinus HOM05D001431 ORTHO05D001268 4.0e-12 75.5 150 34.0
Gohir.A06G099800 Gossypium hirsutum HOM05D001431 ORTHO05D001268 4.0e-12 75.5 156 37.2
SGA_v2.0_scaffold30G12483 Striga asiatica HOM05D001431 ORTHO05D001268 1.5e-11 73.6 139 36.0
COL.COLO4_18913 Corchorus olitorius HOM05D001431 ORTHO05D001268 2.0e-11 73.2 139 37.4
Atru.chr7.2499 Acer truncatum HOM05D001431 ORTHO05D001268 3.3e-11 72.4 150 33.3
TAR626G1912 Trochodendron aralioides HOM05D001431 ORTHO05D001268 3.3e-11 72.4 147 35.4
Haze_21462 Corylus avellana HOM05D024967 ORTHO05D001268 4.4e-11 72.0 153 35.3
Glyma.13G157400 Glycine max HOM05D001431 ORTHO05D001268 7.5e-11 71.2 137 38.7
Glyma.17G105000 Glycine max HOM05D001431 ORTHO05D001268 7.5e-11 71.2 137 38.0
Prupe.1G486100 Prunus persica HOM05D001431 ORTHO05D001268 7.5e-11 71.2 153 36.6
SGA_v2.0_scaffold224G42972 Striga asiatica HOM05D001431 ORTHO05D001268 2.8e-10 69.3 143 35.7
Cfa013105 Carpinus fangiana HOM05D024967 ORTHO05D001268 3.7e-10 68.9 163 35.0
CiPaw.15G181700 Carya illinoinensis HOM05D001431 ORTHO05D001268 6.3e-10 68.2 144 34.0
arahy.Tifrunner.gnm1.ann1.KMWM4V Arachis hypogaea HOM05D001431 ORTHO05D001268 8.2e-10 67.8 137 34.3
Hma1.2p1_1784F.1_g302160 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 8.2e-10 67.8 150 33.3
MD15G1130700 Malus domestica HOM05D001431 ORTHO05D001268 8.2e-10 67.8 134 41.8
Manes.03G011900 Manihot esculenta HOM05D001431 ORTHO05D001268 1.1e-09 67.4 137 35.0
TAR383G0017 Trochodendron aralioides HOM05D001431 ORTHO05D001268 1.1e-09 67.4 126 40.5
Manes.16G126000 Manihot esculenta HOM05D001431 ORTHO05D001268 1.4e-09 67.0 137 36.5
Hma1.2p1_0949F.1_g240600 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.8e-09 66.6 150 33.3
CiPaw.07G227000 Carya illinoinensis HOM05D001431 ORTHO05D001268 2.4e-09 66.2 138 36.2
AL6G36880 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 3.1e-09 65.9 108 38.9
FvH4_2g28310 Fragaria vesca HOM05D001431 ORTHO05D001268 3.1e-09 65.9 121 43.8
Thecc.09G141800 Theobroma cacao HOM05D001431 ORTHO05D001268 5.3e-09 65.1 123 38.2
EL10Ac5g10788 Beta vulgaris HOM05D001431 ORTHO05D001268 7.0e-09 64.7 77 49.4
Haze_21471 Corylus avellana HOM05D024967 ORTHO05D001268 7.0e-09 64.7 135 35.6
PSO063G3193 Papaver somniferum HOM05D001431 ORTHO05D001268 7.0e-09 64.7 132 35.6
Medtr4g116530 Medicago truncatula HOM05D001431 ORTHO05D001268 9.1e-09 64.3 138 31.9
MBI15_g10642_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 1.6e-08 63.5 142 34.5
Nn8g39717 Nelumbo nucifera HOM05D001431 ORTHO05D001268 1.6e-08 63.5 125 39.2
Thhalv10005131m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 2.0e-08 63.2 105 39.0
Sp2g22300 Schrenkiella parvula HOM05D001431 ORTHO05D001268 2.0e-08 63.2 105 38.1
Actinidia14101 Actinidia chinensis HOM05D001431 ORTHO05D001268 2.7e-08 62.8 135 33.3
FAN20G3221 Fragaria x ananassa HOM05D001431 ORTHO05D001268 2.7e-08 62.8 121 40.5
unitig_52.g17583 Utricularia gibba HOM05D001431 ORTHO05D001268 2.7e-08 62.8 134 37.3
Psat4g033120 Pisum sativum HOM05D001431 ORTHO05D001268 3.5e-08 62.4 137 32.1
BcaNung06283 Brassica carinata HOM05D001431 ORTHO05D001268 4.5e-08 62.0 103 39.8
C09p06900 Brassica napus HOM05D001431 ORTHO05D001268 4.5e-08 62.0 103 39.8
BolC9t53610H Brassica oleracea HOM05D001431 ORTHO05D001268 4.5e-08 62.0 103 39.8
CsaV3_1G028510 Cucumis sativus L. HOM05D001431 ORTHO05D001268 4.5e-08 62.0 133 33.1
AT5G25240 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 5.9e-08 61.6 126 34.1
BcaB04g19797 Brassica carinata HOM05D001431 ORTHO05D001268 5.9e-08 61.6 121 36.4
Duzib147G0546 Durio zibethinus HOM05D001431 ORTHO05D001268 5.9e-08 61.6 72 48.6
HanXRQChr03g0064021 Helianthus annuus HOM05D001431 ORTHO05D001268 5.9e-08 61.6 123 34.1
Prupe.3G281600 Prunus persica HOM05D001431 ORTHO05D001268 7.7e-08 61.2 72 44.4
THA.LOC104814117 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 7.7e-08 61.2 155 33.5
PSO832G1465 Papaver somniferum HOM05D001431 ORTHO05D001268 1.0e-07 60.8 63 49.2
Peaxi162Scf00108g00003 Petunia axillaris HOM05D001431 ORTHO05D001268 1.0e-07 60.8 58 48.3
PGR142G0349 Punica granatum HOM05D001431 ORTHO05D001268 1.0e-07 60.8 128 37.5
SalBow7G1530 Salvia bowleyana HOM05D001431 ORTHO05D001268 1.0e-07 60.8 72 45.8
Migut.K01365 Erythranthe guttata HOM05D001431 ORTHO05D001268 1.3e-07 60.5 72 45.8
Oeu047316.1 Olea europaea HOM05D001431 ORTHO05D001268 1.3e-07 60.5 138 34.1
Peaxi162Scf01184g00110 Petunia axillaris HOM05D001431 ORTHO05D001268 1.3e-07 60.5 58 48.3
QL02p091271 Quercus lobata HOM05D001431 ORTHO05D001268 1.3e-07 60.5 122 38.5
QL02p091314 Quercus lobata HOM05D001431 ORTHO05D001268 1.3e-07 60.5 148 33.8
A09p06250 Brassica napus HOM05D001431 ORTHO05D001268 1.7e-07 60.1 103 39.8
BraA09t36269Z Brassica rapa HOM05D001431 ORTHO05D001268 1.7e-07 60.1 103 39.8
AUR62008241 Chenopodium quinoa HOM05D001431 ORTHO05D001268 1.7e-07 60.1 73 47.9
AUR62030993 Chenopodium quinoa HOM05D001431 ORTHO05D001268 1.7e-07 60.1 73 47.9
COL.COLO4_04371 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.7e-07 60.1 73 49.3
FAN27G3025 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.7e-07 60.1 115 42.6
RcHm_v2.0_Chr6g0297221 Rosa chinensis HOM05D001431 ORTHO05D001268 1.7e-07 60.1 137 40.1
TPR.G15780 Trifolium pratense HOM05D001431 ORTHO05D001268 1.7e-07 60.1 138 32.6
CAN.G518.20 Capsicum annuum HOM05D001431 ORTHO05D001268 2.2e-07 59.7 68 47.1
Medtr6g007727 Medicago truncatula HOM05D001431 ORTHO05D001268 2.2e-07 59.7 64 50.0
Lsat_1_v5_gn_0_5740 Lactuca sativa HOM05D001431 ORTHO05D001268 2.9e-07 59.3 70 45.7
Oeu062367.1 Olea europaea HOM05D001431 ORTHO05D001268 2.9e-07 59.3 74 48.6
Lj6g0025598 Lotus japonicus HOM05D001431 ORTHO05D001268 3.8e-07 58.9 136 33.1
TAR622G1254 Trochodendron aralioides HOM05D001431 ORTHO05D001268 3.8e-07 58.9 72 45.8
MBI15_g37783_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 5.0e-07 58.5 84 45.2
Manes.14G138600 Manihot esculenta HOM05D001431 ORTHO05D001268 5.0e-07 58.5 126 34.1
Rhsim08G0170200 Rhododendron simsii HOM05D001431 ORTHO05D001268 5.0e-07 58.5 104 40.4
MELO3C010262.2 Cucumis melo HOM05D001431 ORTHO05D001268 6.5e-07 58.2 134 32.1
Sopen06g027650 Solanum pennellii HOM05D001431 ORTHO05D001268 6.5e-07 58.2 94 38.3
Cfa020891 Carpinus fangiana HOM05D001431 ORTHO05D001268 8.5e-07 57.8 138 32.6
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 8.5e-07 57.8 69 49.3
Migut.I00039 Erythranthe guttata HOM05D001431 ORTHO05D001268 8.5e-07 57.8 68 45.6
Lju41C33T14 Lonicera japonica HOM05D001431 ORTHO05D001268 8.5e-07 57.8 142 35.2
Lalb_Chr11g0072871 Lupinus albus HOM05D001431 ORTHO05D001268 8.5e-07 57.8 123 32.5
Nitab4.5_0011752g0010 Nicotiana tabacum HOM05D001431 ORTHO05D001268 8.5e-07 57.8 64 43.8
Oeu054677.1 Olea europaea HOM05D001431 ORTHO05D001268 8.5e-07 57.8 77 41.6
Peaxi162Scf01184g00111 Petunia axillaris HOM05D001431 ORTHO05D001268 8.5e-07 57.8 58 46.6
Solyc06g071370.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 8.5e-07 57.8 93 38.7
PGSC0003DMG400026998 Solanum tuberosum HOM05D001431 ORTHO05D001268 8.5e-07 57.8 93 38.7
SGA_v2.0_scaffold90G27977 Striga asiatica HOM05D001431 ORTHO05D001268 8.5e-07 57.8 90 42.2
unitig_62.g23460 Utricularia gibba HOM05D001431 ORTHO05D001268 8.5e-07 57.8 75 45.3
Aa31LG4G16660 Aethionema arabicum HOM05D001431 ORTHO05D001268 1.1e-06 57.4 102 41.2
CSS0003284 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.1e-06 57.4 113 38.9
Duzib264G0011 Durio zibethinus HOM05D001431 ORTHO05D001268 1.1e-06 57.4 62 48.4
Gorai.010G056200 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.1e-06 57.4 128 32.8
Psat0ss25082g0080 Pisum sativum HOM05D001431 ORTHO05D001268 1.1e-06 57.4 58 44.8
CSS0009490 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.5e-06 57.0 135 33.3
CAN.G206.43 Capsicum annuum HOM05D001431 ORTHO05D001268 1.5e-06 57.0 69 43.5
Duzib168G0421 Durio zibethinus HOM05D001431 ORTHO05D001268 1.5e-06 57.0 60 50.0
Peaxi162Scf00108g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 1.5e-06 57.0 58 46.6
Sc18g0000050 Simmondsia chinensis HOM05D001431 ORTHO05D001268 1.5e-06 57.0 96 38.5
Solyc05g039960.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 1.5e-06 57.0 70 44.3
CSS0036833 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.9e-06 56.6 64 53.1
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 1.9e-06 56.6 70 48.6
Duzib264G0305 Durio zibethinus HOM05D001431 ORTHO05D001268 1.9e-06 56.6 62 48.4
Gohir.A06G050000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 1.9e-06 56.6 128 32.8
Hma1.2p1_0182F.1_g080500 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.9e-06 56.6 130 36.2
Rhsim03G0254500 Rhododendron simsii HOM05D001431 ORTHO05D001268 1.9e-06 56.6 133 30.8
Ca_21904_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 2.5e-06 56.2 69 44.9
Ca_21922_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 2.5e-06 56.2 69 44.9
MD09G1036100 Malus domestica HOM05D001431 ORTHO05D001268 2.5e-06 56.2 72 45.8
Medtr2g461190 Medicago truncatula HOM05D001431 ORTHO05D001268 2.5e-06 56.2 58 44.8
Medtr4g106650 Medicago truncatula HOM05D001431 ORTHO05D001268 2.5e-06 56.2 100 39.0
ATR0580G431 Amborella trichopoda HOM05D001431 ORTHO05D001268 3.2e-06 55.8 68 47.1
Glyma.04G180800 Glycine max HOM05D001431 ORTHO05D001268 3.2e-06 55.8 65 47.7
Glyma.09G095800 Glycine max HOM05D001431 ORTHO05D001268 3.2e-06 55.8 148 33.1
Manes.14G067900 Manihot esculenta HOM05D001431 ORTHO05D001268 3.2e-06 55.8 107 41.1
Manes.15G180800 Manihot esculenta HOM05D001431 ORTHO05D001268 3.2e-06 55.8 63 47.6
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 3.2e-06 55.8 72 43.1
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 3.2e-06 55.8 72 43.1
Rhsim08G0056500 Rhododendron simsii HOM05D001431 ORTHO05D001268 3.2e-06 55.8 71 50.7
CARHR188250 Cardamine hirsuta HOM05D001431 ORTHO05D001268 4.2e-06 55.5 110 35.5
FvH4_6g50470 Fragaria vesca HOM05D001431 ORTHO05D001268 4.2e-06 55.5 79 46.8
FAN14G2501 Fragaria x ananassa HOM05D001431 ORTHO05D001268 4.2e-06 55.5 79 46.8
HanXRQChr09g0272321 Helianthus annuus HOM05D001431 ORTHO05D001268 4.2e-06 55.5 75 46.7
Hma1.2p1_0176F.1_g077720 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 4.2e-06 55.5 125 37.6
Hma1.2p1_0967F.1_g242290 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 4.2e-06 55.5 66 48.5
Solyc02g087030.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 4.2e-06 55.5 63 44.4
Sopen02g031790 Solanum pennellii HOM05D001431 ORTHO05D001268 4.2e-06 55.5 63 44.4
Lj4g0027034 Lotus japonicus HOM05D001431 ORTHO05D001268 5.5e-06 55.1 118 35.6
MD17G1037700 Malus domestica HOM05D001431 ORTHO05D001268 5.5e-06 55.1 72 44.4
Psat4g057080 Pisum sativum HOM05D001431 ORTHO05D001268 5.5e-06 55.1 68 44.1
Thecc.04G006600 Theobroma cacao HOM05D001431 ORTHO05D001268 5.5e-06 55.1 72 44.4
TWI34G1362 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 5.5e-06 55.1 130 34.6
Ca_27061_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 7.2e-06 54.7 58 44.8
Glyma.15G202100 Glycine max HOM05D001431 ORTHO05D001268 7.2e-06 54.7 145 32.4
Lj5P122T91 Lonicera japonica HOM05D001431 ORTHO05D001268 7.2e-06 54.7 74 44.6
Phvul.009G090600 Phaseolus vulgaris HOM05D030354 ORTHO05D029741 7.2e-06 54.7 75 40.0
TPR.G37484 Trifolium pratense HOM05D001431 ORTHO05D001268 7.2e-06 54.7 102 37.3
A02p42530 Brassica napus HOM05D001431 ORTHO05D001268 9.4e-06 54.3 67 49.3
BraA02t09182Z Brassica rapa HOM05D001431 ORTHO05D001268 9.4e-06 54.3 67 49.3
CAN.G628.72 Capsicum annuum HOM05D001431 ORTHO05D001268 9.4e-06 54.3 73 45.2
Dinv35043 Davidia involucrata HOM05D001431 ORTHO05D001268 9.4e-06 54.3 63 47.6
Glyma.05G036000 Glycine max HOM05D001431 ORTHO05D001268 9.4e-06 54.3 120 35.8
Lalb_Chr07g0179511 Lupinus albus HOM05D001431 ORTHO05D001268 9.4e-06 54.3 140 33.6
Phvul.008G152300 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 9.4e-06 54.3 70 47.1
Potri.003G101300 Populus trichocarpa HOM05D001431 ORTHO05D001268 9.4e-06 54.3 63 46.0
Solyc03g114130.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 9.4e-06 54.3 66 45.5
Sopen03g033190 Solanum pennellii HOM05D001431 ORTHO05D001268 9.4e-06 54.3 66 45.5
VMungo0464G1040 Vigna mungo HOM05D001431 ORTHO05D001268 9.4e-06 54.3 58 50.0


User provided reference genes

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