Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 1.1e-150 536.6 267 100.0
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 4.0e-108 395.2 259 76.1
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 5.0e-103 378.3 256 73.4
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.5e-102 375.9 259 71.4
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 7.3e-102 374.4 257 73.5
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 9.5e-102 374.0 259 69.9
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 2.8e-101 372.5 255 72.5
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 3.4e-99 365.5 256 70.7
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 3.4e-99 365.5 263 71.1
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 3.4e-99 365.5 260 70.0
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 2.2e-98 362.8 259 68.7
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 2.2e-98 362.8 259 69.9
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 2.2e-98 362.8 262 68.3
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 2.9e-98 362.5 262 68.3
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 8.3e-98 360.9 262 69.1
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 1.1e-97 360.5 259 70.7
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 1.9e-97 359.8 262 67.9
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 4.1e-97 358.6 249 71.9
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 5.4e-97 358.2 259 68.7
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 5.4e-97 358.2 251 70.9
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 5.4e-97 358.2 258 67.4
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 7.1e-97 357.8 282 65.6
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.6e-96 356.7 251 70.9
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 4.6e-96 355.1 263 69.6
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 4.6e-96 355.1 256 70.3
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.3e-95 353.6 263 69.2
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 1.7e-95 353.2 248 71.0
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 2.3e-95 352.8 265 65.7
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 5.1e-95 351.7 260 69.6
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 4.3e-94 348.6 245 70.2
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 4.3e-94 348.6 259 66.8
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 4.3e-94 348.6 249 67.1
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 7.3e-94 347.8 263 67.7
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 7.3e-94 347.8 265 67.2
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 9.5e-94 347.4 263 67.7
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 1.2e-93 347.1 246 70.3
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 1.6e-93 346.7 265 66.4
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.6e-93 346.7 249 69.1
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 2.8e-93 345.9 269 65.1
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 4.7e-93 345.1 259 64.9
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 1.8e-92 343.2 253 68.8
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 3.1e-92 342.4 262 69.8
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 4.0e-92 342.0 262 70.6
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 5.2e-92 341.7 262 69.5
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 5.2e-92 341.7 288 62.5
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 8.9e-92 340.9 256 67.2
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.2e-91 340.5 262 69.1
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 1.5e-91 340.1 265 63.4
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 2.0e-91 339.7 259 66.0
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 2.6e-91 339.3 259 64.1
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 3.4e-91 339.0 249 66.7
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 3.4e-91 339.0 249 66.7
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 3.4e-91 339.0 262 67.2
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 9.9e-91 337.4 249 66.3
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 9.9e-91 337.4 264 64.0
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 9.9e-91 337.4 262 69.5
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 1.7e-90 336.7 249 66.3
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.7e-90 336.7 259 65.3
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 1.7e-90 336.7 264 64.4
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 2.9e-90 335.9 248 69.0
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 2.9e-90 335.9 230 73.0
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 4.9e-90 335.1 261 65.1
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.4e-90 334.7 240 69.2
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 8.4e-90 334.3 260 66.2
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.1e-89 334.0 254 65.7
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 1.1e-89 334.0 261 69.0
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 1.1e-89 334.0 261 64.0
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 3.2e-89 332.4 262 64.5
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 3.2e-89 332.4 246 66.3
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 5.4e-89 331.6 260 65.4
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 9.2e-89 330.9 236 68.2
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.6e-88 330.1 248 66.9
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 4.6e-88 328.6 247 66.0
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 7.8e-88 327.8 240 69.2
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 7.8e-88 327.8 260 65.4
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 7.8e-88 327.8 252 65.1
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 1.0e-87 327.4 255 65.5
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 3.9e-87 325.5 266 62.4
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 3.9e-87 325.5 238 67.2
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 6.6e-87 324.7 238 66.0
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 6.6e-87 324.7 244 65.2
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 1.1e-86 323.9 264 63.3
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 1.5e-86 323.6 238 65.5
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 1.9e-86 323.2 246 64.6
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 4.3e-86 322.0 256 64.5
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 9.6e-86 320.9 245 64.1
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 1.2e-85 320.5 258 65.9
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 6.2e-85 318.2 244 63.5
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 8.1e-85 317.8 256 60.9
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.5e-83 313.5 254 62.6
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 2.7e-80 302.8 261 59.4
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 1.9e-78 296.6 259 58.7
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 4.3e-78 295.4 255 58.0
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 5.6e-78 295.0 288 56.9
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 1.9e-73 280.0 226 64.2
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 7.1e-73 278.1 237 60.3
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 1.6e-72 276.9 257 56.4
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 4.6e-72 275.4 278 52.5
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 6.0e-72 275.0 223 63.2
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 2.5e-70 269.6 260 56.2
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 5.6e-70 268.5 240 58.8
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 3.4e-67 259.2 275 50.5
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.1e-65 254.2 172 74.4
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 1.9e-65 253.4 261 52.9
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 1.8e-63 246.9 256 50.8
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 3.0e-63 246.1 230 55.2
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 2.6e-59 233.0 249 47.4
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 5.8e-59 231.9 196 61.7
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 7.6e-59 231.5 161 70.8
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 3.2e-57 226.1 172 64.5
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 4.6e-56 222.2 176 64.2
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.3e-55 220.7 172 63.4
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.3e-55 220.7 148 75.0
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 3.8e-50 202.6 244 46.3
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.8e-50 202.6 152 65.8
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 2.1e-48 196.8 207 49.3
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.7e-46 188.7 141 65.2
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 6.3e-45 185.3 141 67.4
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 4.1e-44 182.6 141 67.4
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 1.3e-42 177.6 134 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 2.2e-42 176.8 181 51.9
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 6.5e-42 175.3 143 65.7
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 6.5e-34 148.7 109 66.1
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 1.6e-32 144.1 133 53.4
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 2.7e-32 143.3 95 72.6
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 2.6e-30 136.7 107 64.5
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.5e-27 126.3 87 67.8
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 4.5e-27 125.9 89 71.9
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 6.5e-26 122.1 130 50.0
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 5.5e-25 119.0 92 64.1
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 1.7e-21 107.5 75 66.7
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 1.3e-18 97.8 92 59.8
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 1.3e-18 97.8 92 59.8
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.5e-17 94.4 254 32.3
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 7.5e-14 82.0 76 59.2
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 6.3e-13 79.0 76 57.9
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 6.3e-13 79.0 76 57.9


User provided reference genes

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