Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 3.3e-151 538.5 305 100.0
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.9e-78 296.2 342 55.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.6e-73 279.3 347 53.0
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.2e-69 265.8 338 52.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.7e-68 263.1 318 51.9
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 3.5e-68 262.7 349 51.9
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 7.9e-68 261.5 348 52.6
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.8e-67 260.4 332 49.7
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.1e-66 257.7 327 52.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.9e-66 256.9 343 52.2
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.1e-65 253.4 336 51.5
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.4e-64 250.0 343 45.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.4e-64 250.0 349 47.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 4.0e-64 249.2 243 66.7
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 4.0e-64 249.2 363 45.2
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.5e-63 247.3 327 51.4
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 3.4e-63 246.1 339 49.9
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 7.6e-63 245.0 341 50.1
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.2e-62 243.4 340 50.6
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 8.4e-62 241.5 340 53.5
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.2e-61 239.2 340 50.9
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.9e-60 235.0 343 45.8
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.0e-59 233.0 343 48.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.0e-59 233.0 340 50.0
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 6.7e-59 231.9 341 50.4
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.5e-58 230.7 322 48.8
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 9.6e-58 228.0 328 52.4
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.3e-57 227.6 321 51.7
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 2.8e-57 226.5 327 45.3
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 2.8e-57 226.5 342 44.7
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 4.8e-57 225.7 350 48.3
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 3.1e-56 223.0 345 48.4
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 3.1e-56 223.0 345 44.9
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 3.1e-56 223.0 341 47.5
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 4.0e-56 222.6 327 49.8
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 6.9e-56 221.9 333 49.5
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 9.0e-56 221.5 349 43.6
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-55 221.1 349 45.6
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-55 221.1 342 48.0
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.5e-55 220.7 323 49.2
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.5e-55 220.7 340 46.8
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.5e-55 220.7 327 44.6
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.8e-55 218.8 318 48.7
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 7.6e-55 218.4 338 48.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.7e-54 217.2 324 51.9
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 4.9e-54 215.7 299 46.5
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 6.5e-54 215.3 331 43.5
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 6.5e-54 215.3 324 51.2
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.1e-53 214.5 326 51.2
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.2e-53 213.0 343 42.9
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 4.2e-53 212.6 329 51.4
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 7.1e-53 211.8 334 44.0
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-52 210.7 342 46.2
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.1e-52 210.3 335 45.1
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 2.1e-52 210.3 340 47.1
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 2.1e-52 210.3 340 47.9
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.7e-52 209.9 341 46.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 6.0e-52 208.8 340 47.4
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.8e-51 207.2 334 43.4
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.0e-51 206.5 340 49.1
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.5e-50 203.4 512 35.9
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 3.3e-50 203.0 243 51.4
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.3e-49 201.1 363 40.2
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 6.3e-49 198.7 283 52.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.1e-48 198.0 278 51.8
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.8e-48 197.2 323 44.3
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.4e-48 196.8 347 44.1
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 3.1e-48 196.4 246 56.1
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 6.9e-48 195.3 348 39.9
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.5e-47 194.1 345 45.5
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.5e-47 194.1 350 44.9
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.6e-47 193.4 324 44.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 3.4e-47 193.0 326 43.6
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.0e-46 191.4 293 50.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.0e-46 191.4 341 45.2
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 3.8e-46 189.5 331 41.1
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 8.5e-46 188.3 320 47.8
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.5e-46 188.3 339 44.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.1e-45 188.0 338 41.1
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.1e-45 188.0 301 42.2
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.4e-45 187.6 338 39.3
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 7.2e-45 185.3 334 43.4
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 9.3e-45 184.9 341 39.6
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.1e-44 183.7 242 53.7
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.0e-43 181.4 321 45.8
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.3e-43 181.0 320 45.9
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 8.7e-43 178.3 333 43.5
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 5.7e-42 175.6 240 51.7
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.7e-41 174.1 349 37.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 8.2e-41 171.8 298 47.3
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.8e-40 170.6 343 37.3
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.8e-40 170.6 343 37.3
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.2e-39 167.9 283 42.4
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.2e-39 167.9 337 37.7
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.5e-39 167.5 248 50.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.0e-39 167.2 303 38.9
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.6e-39 166.8 325 38.8
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.6e-39 166.8 342 36.8
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.4e-39 166.4 330 43.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 3.8e-38 162.9 340 40.9
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.0e-38 162.5 303 44.2
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.2e-37 159.8 241 47.7
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 4.2e-37 159.5 322 37.0
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 5.5e-37 159.1 330 40.9
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-36 157.5 349 39.0
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 3.6e-36 156.4 349 35.8
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.5e-34 151.0 354 34.7
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.5e-34 151.0 327 34.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 7.4e-34 148.7 335 39.4
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 9.7e-34 148.3 341 39.9
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.2e-31 141.4 317 38.8
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.5e-31 141.0 307 42.3
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.4e-31 139.8 341 33.1
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.9e-30 136.7 354 32.8
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.0e-30 136.0 278 38.5
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 4.2e-29 132.9 360 30.8
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 2.1e-28 130.6 300 33.0
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.6e-28 129.8 308 33.1
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.8e-27 127.5 313 37.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 3.0e-27 126.7 244 37.3
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 5.2e-27 125.9 190 40.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 5.7e-26 122.5 301 33.2
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.7e-25 120.9 352 31.8
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.6e-23 113.6 88 64.8
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.9e-23 112.5 276 31.5
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-22 111.3 215 37.2
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 5.5e-21 105.9 181 42.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 6.7e-19 99.0 192 35.4
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.0e-18 97.4 293 36.2
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 2.6e-18 97.1 195 42.6
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 2.8e-17 93.6 268 37.3
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.0e-16 89.0 268 34.7
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.2e-14 84.0 119 41.2
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 2.2e-14 84.0 116 44.8
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 9.4e-13 78.6 112 44.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 9.4e-13 78.6 288 28.1
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 2.1e-12 77.4 87 48.3
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.4e-11 74.7 110 43.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.3e-11 73.9 77 53.2
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 8.8e-11 72.0 370 30.3
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 4.8e-09 66.2 92 44.6
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.1e-08 63.5 83 42.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.7e-07 60.5 78 50.0
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 7.7e-07 58.9 70 47.1
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.3e-06 58.2 56 57.1
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 2.3e-06 57.4 82 42.7


User provided reference genes

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