Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.8e-81 305.8 153 100.0
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 7.3e-14 81.3 77 57.1
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.3e-14 81.3 122 43.4
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.6e-13 80.1 121 42.1
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.6e-13 80.1 121 43.8
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.8e-13 79.3 78 53.8
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.8e-13 79.3 145 38.6
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 2.8e-13 79.3 77 54.5
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 4.7e-13 78.6 121 43.8
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 6.2e-13 78.2 105 41.9
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.1e-13 77.8 107 47.7
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.4e-12 77.0 68 57.4
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.4e-12 77.0 141 39.7
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.8e-12 76.6 81 51.9
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.1e-12 75.9 68 55.9
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 5.2e-12 75.1 120 41.7
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 6.8e-12 74.7 108 44.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.5e-11 73.6 143 39.9
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.0e-11 73.2 146 39.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 2.0e-11 73.2 60 66.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.0e-11 73.2 76 52.6
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.0e-11 73.2 120 40.8
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 2.6e-11 72.8 108 44.4
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.6e-11 72.8 121 40.5
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.4e-11 72.4 146 37.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 4.4e-11 72.0 60 58.3
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 7.6e-11 71.2 79 51.9
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 7.6e-11 71.2 85 49.4
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.3e-10 70.5 85 48.2
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.3e-10 70.5 125 44.0
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.3e-10 70.5 68 55.9
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.8e-10 68.9 97 43.3
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 3.8e-10 68.9 57 64.9
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.9e-10 68.6 113 39.8
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 4.9e-10 68.6 121 38.8
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 6.4e-10 68.2 61 54.1
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.4e-10 68.2 61 54.1
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.4e-10 67.8 68 55.9
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 8.4e-10 67.8 56 57.1
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 8.4e-10 67.8 75 46.7
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 1.1e-09 67.4 80 47.5
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.1e-09 67.4 83 45.8
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.1e-09 67.4 79 46.8
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.9e-09 66.6 82 42.7
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.9e-09 66.6 124 37.9
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.9e-09 66.6 58 55.2
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 2.4e-09 66.2 58 58.6
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.4e-09 66.2 117 41.0
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.2e-09 65.9 59 54.2
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 4.1e-09 65.5 59 57.6
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 4.1e-09 65.5 81 48.1
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.1e-09 65.5 60 60.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.1e-09 65.5 56 58.9
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.1e-09 65.5 56 58.9
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.1e-09 65.5 141 29.8
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 4.1e-09 65.5 54 63.0
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 7.1e-09 64.7 96 46.9
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 7.1e-09 64.7 102 36.3
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 7.1e-09 64.7 60 60.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.1e-09 64.7 60 60.0
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.1e-09 64.7 60 60.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.1e-09 64.7 60 60.0
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.1e-09 64.7 56 58.9
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 9.2e-09 64.3 61 52.5
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.2e-09 64.3 68 54.4
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.2e-09 64.3 68 54.4
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.6e-08 63.5 71 46.5
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.6e-08 63.5 61 57.4
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.6e-08 63.5 60 58.3
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.6e-08 63.5 67 52.2
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.6e-08 63.5 78 41.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.1e-08 63.2 125 36.8
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.7e-08 62.8 122 36.1
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 2.7e-08 62.8 61 49.2
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 2.7e-08 62.8 90 40.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 3.5e-08 62.4 76 43.4
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.5e-08 62.4 60 56.7
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.6e-08 62.0 68 45.6
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 4.6e-08 62.0 59 54.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 4.6e-08 62.0 141 29.8
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 4.6e-08 62.0 62 56.5
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 6.0e-08 61.6 66 50.0
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 6.0e-08 61.6 121 36.4
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 7.8e-08 61.2 60 50.0
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 7.8e-08 61.2 90 45.6
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 7.8e-08 61.2 81 40.7
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 7.8e-08 61.2 81 40.7
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 1.0e-07 60.8 94 39.4
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.0e-07 60.8 120 36.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.0e-07 60.8 99 38.4
CDE03G0267 Ceratophyllum demersum HOM05D279964 ORTHO05D043887 1.3e-07 60.5 81 43.2
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.3e-07 60.5 70 45.7
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.3e-07 60.5 80 41.2
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-07 60.1 56 50.0
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-07 60.1 56 50.0
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.7e-07 60.1 56 50.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.7e-07 60.1 78 43.6
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.7e-07 60.1 85 41.2
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.7e-07 60.1 70 44.3
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 2.3e-07 59.7 65 44.6
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.3e-07 59.7 67 43.3
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.9e-07 58.9 62 48.4
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 3.9e-07 58.9 81 40.7
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.1e-07 58.5 62 48.4
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 5.1e-07 58.5 72 43.1
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 6.6e-07 58.2 57 50.9
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.6e-07 58.2 62 48.4
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 6.6e-07 58.2 78 43.6
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 1.1e-06 57.4 59 52.5
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.1e-06 57.4 65 44.6
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.5e-06 57.0 78 41.0
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-06 57.0 56 51.8
CARHR008010 Cardamine hirsuta HOM05D010843 ORTHO05D012975 1.9e-06 56.6 76 46.1
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.9e-06 56.6 87 41.4
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 2.5e-06 56.2 68 45.6
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 2.5e-06 56.2 84 41.7
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.3e-06 55.8 61 42.6
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 3.3e-06 55.8 59 47.5
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 3.3e-06 55.8 56 53.6
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 4.3e-06 55.5 56 50.0
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.3e-06 55.5 80 41.2
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 4.3e-06 55.5 86 36.0
SEGI_39048 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 4.3e-06 55.5 102 37.3
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 5.6e-06 55.1 112 37.5
A06p05240 Brassica napus HOM05D010843 ORTHO05D012975 5.6e-06 55.1 75 44.0
BraA06t23731Z Brassica rapa HOM05D010843 ORTHO05D012975 5.6e-06 55.1 75 44.0
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.6e-06 55.1 80 43.8
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.6e-06 55.1 59 49.2
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 5.6e-06 55.1 61 50.8
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 5.6e-06 55.1 75 42.7
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 5.6e-06 55.1 51 54.9
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 5.6e-06 55.1 76 42.1
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 5.6e-06 55.1 68 47.1
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 7.3e-06 54.7 80 41.2
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 7.3e-06 54.7 68 44.1
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 7.3e-06 54.7 76 48.7
AL1G18590 Arabidopsis lyrata HOM05D010843 ORTHO05D012975 9.6e-06 54.3 76 47.4


User provided reference genes

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