Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 8.5e-171 603.6 306 100.0
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 1.7e-118 429.9 307 68.7
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 2.7e-116 422.5 309 67.0
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 2.7e-116 422.5 308 66.2
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 1.0e-115 420.6 309 68.3
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 6.6e-115 417.9 309 68.6
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 1.6e-113 413.3 309 68.0
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 1.6e-113 413.3 309 65.7
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 6.2e-113 411.4 309 65.7
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 8.0e-113 411.0 320 65.9
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 1.1e-112 410.6 307 66.1
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 1.4e-112 410.2 308 67.2
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.8e-112 409.8 309 65.0
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 5.2e-112 408.3 307 65.1
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 6.8e-112 407.9 307 65.5
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 8.9e-112 407.5 307 64.8
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.5e-111 406.8 307 64.8
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 9.8e-111 404.1 307 64.2
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 1.7e-110 403.3 307 64.2
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 1.1e-109 400.6 307 65.1
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 1.9e-109 399.8 307 64.5
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 4.1e-109 398.7 309 64.7
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 2.7e-108 396.0 309 65.4
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 1.3e-107 393.7 307 61.2
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 2.3e-107 392.9 309 64.7
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.9e-106 389.8 312 63.5
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.9e-106 389.8 312 63.5
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 1.9e-106 389.8 309 64.1
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 7.3e-106 387.9 309 63.4
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 7.3e-106 387.9 307 65.1
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.1e-104 384.0 309 63.1
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 2.3e-104 382.9 309 60.5
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 2.3e-104 382.9 309 62.5
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 3.1e-104 382.5 309 63.1
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 5.2e-104 381.7 309 62.5
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 6.8e-104 381.3 309 62.5
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.5e-103 380.2 309 62.1
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.0e-103 379.8 309 62.1
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 7.5e-103 377.9 307 61.2
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 7.5e-103 377.9 309 62.1
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 7.5e-103 377.9 307 60.6
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-101 374.0 309 61.5
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 4.1e-101 372.1 351 56.4
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 5.4e-101 371.7 429 49.2
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 7.1e-101 371.3 307 57.7
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 4.6e-100 368.6 307 57.7
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 6.0e-100 368.2 308 59.4
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 7.8e-100 367.9 309 61.2
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.0e-99 367.5 309 61.2
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 2.3e-99 366.3 307 58.0
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 3.9e-99 365.5 304 57.6
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 6.6e-99 364.8 306 56.9
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 8.6e-99 364.4 306 58.2
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 1.1e-98 364.0 305 59.7
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.1e-98 364.0 353 55.0
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 1.1e-98 364.0 307 57.3
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 1.5e-98 363.6 309 57.3
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 1.9e-98 363.2 305 59.3
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 5.6e-98 361.7 273 66.3
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 5.6e-98 361.7 309 57.6
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 9.5e-98 360.9 307 56.7
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.4e-96 357.1 309 57.6
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 3.4e-95 352.4 237 72.6
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 4.4e-95 352.1 304 56.2
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 2.2e-94 349.7 300 58.7
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.2e-92 344.0 306 56.5
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.0e-91 340.9 357 51.3
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 8.7e-91 337.8 306 54.6
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.5e-90 337.0 341 50.1
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 1.1e-88 330.9 311 52.1
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 4.0e-88 328.9 294 54.4
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 4.0e-88 328.9 306 52.3
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 1.2e-87 327.4 306 52.0
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 1.2e-87 327.4 306 52.0
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 2.2e-86 323.2 306 51.6
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 6.4e-86 321.6 308 51.3
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.2e-84 317.4 303 52.8
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 2.1e-84 316.6 306 52.0
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 7.8e-84 314.7 306 50.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 1.0e-83 314.3 304 50.3
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 3.0e-83 312.8 306 49.3
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 1.1e-82 310.8 291 51.5
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 5.6e-82 308.5 306 50.0
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 3.6e-81 305.8 237 62.0
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 4.8e-81 305.4 306 49.3
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 8.1e-81 304.7 289 51.9
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 1.3e-78 297.4 243 63.8
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 1.7e-78 297.0 298 53.0
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.4e-77 293.9 249 59.4
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.8e-75 287.0 268 56.3
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 8.7e-75 284.6 268 55.6
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 2.1e-73 280.0 301 48.8
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.4e-72 277.3 323 49.5
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 4.5e-71 272.3 304 47.4
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 6.4e-70 268.5 222 58.6
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 9.6e-66 254.6 293 44.0
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 4.8e-65 252.3 221 59.3
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.4e-64 250.8 238 51.7
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 1.2e-63 247.7 174 71.3
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 7.9e-60 235.0 231 53.2
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 5.7e-58 228.8 240 47.9
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 3.7e-49 199.5 240 47.5
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 6.9e-48 195.3 293 34.5
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 1.7e-38 164.1 272 31.6
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.2e-38 163.7 114 66.7
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 6.1e-28 129.0 113 54.9
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 2.7e-23 113.6 67 76.1
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 4.5e-23 112.8 67 79.1
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.7e-22 110.9 67 77.6
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 2.5e-21 107.1 63 74.6
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 1.8e-19 100.9 63 71.4
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 4.4e-10 69.7 63 54.0


User provided reference genes

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