Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 2.0e-135 485.7 241 100.0
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 9.6e-77 290.8 244 60.2
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 4.4e-74 282.0 243 56.8
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.3e-68 263.8 243 51.9
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 1.8e-67 260.0 241 49.8
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 2.0e-66 256.5 242 50.8
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 5.8e-66 255.0 243 52.3
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 2.2e-65 253.1 242 50.4
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 2.2e-65 253.1 243 48.6
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 2.2e-65 253.1 243 50.2
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 1.9e-64 250.0 244 53.3
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 4.2e-64 248.8 243 50.6
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 9.3e-64 247.7 242 48.8
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 1.6e-63 246.9 243 50.2
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 1.6e-63 246.9 243 49.8
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.0e-62 244.2 241 49.4
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 1.3e-62 243.8 242 49.2
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 1.6e-60 236.9 242 51.2
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 2.8e-60 236.1 242 47.9
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.8e-60 235.3 242 49.2
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 1.1e-59 234.2 243 47.3
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 1.8e-59 233.4 243 46.1
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.8e-59 233.4 241 48.5
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.4e-59 233.0 242 47.9
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 6.9e-59 231.5 242 47.9
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 9.0e-59 231.1 241 46.1
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 1.2e-58 230.7 242 47.5
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.2e-58 230.7 242 47.5
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 1.2e-58 230.7 242 45.9
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 1.5e-58 230.3 243 46.5
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 2.0e-58 229.9 242 45.9
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 2.0e-58 229.9 243 45.7
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 3.4e-58 229.2 243 44.9
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 3.4e-58 229.2 242 46.7
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 5.8e-58 228.4 245 46.5
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 5.8e-58 228.4 247 47.0
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 7.6e-58 228.0 244 47.5
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 7.6e-58 228.0 245 46.9
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 4.9e-57 225.3 247 46.6
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 4.9e-57 225.3 243 44.9
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 6.4e-57 224.9 243 47.3
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 6.4e-57 224.9 243 47.3
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 8.4e-57 224.6 242 46.3
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 1.1e-56 224.2 242 44.6
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 1.9e-56 223.4 245 47.8
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 2.4e-56 223.0 243 44.0
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 7.1e-56 221.5 245 44.5
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 2.7e-55 219.5 243 44.9
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 2.7e-55 219.5 243 46.1
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 2.7e-55 219.5 243 44.9
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 1.0e-54 217.6 266 42.9
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 3.0e-54 216.1 245 46.1
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.0e-54 216.1 242 45.0
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 3.0e-54 216.1 242 46.3
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 3.9e-54 215.7 243 44.0
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 6.7e-54 214.9 241 45.6
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 6.7e-54 214.9 242 45.0
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 8.7e-54 214.5 242 44.2
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 9.6e-53 211.1 244 44.3
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 4.0e-51 205.7 220 45.9
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 9.0e-51 204.5 242 42.6
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 2.6e-50 203.0 242 42.1
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 1.7e-49 200.3 242 41.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.2e-49 199.9 238 45.4
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 2.2e-49 199.9 242 42.1
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 1.9e-48 196.8 242 42.1
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 4.2e-48 195.7 242 41.3
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 5.5e-48 195.3 292 38.7
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 1.2e-47 194.1 200 47.0
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 1.6e-47 193.7 186 53.2
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.6e-47 193.7 242 40.5
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 2.1e-47 193.4 240 42.1
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.0e-46 189.5 242 41.7
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 3.9e-46 189.1 246 39.8
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 8.7e-46 188.0 242 39.7
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 4.3e-45 185.7 242 41.7
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 8.2e-44 181.4 173 50.9
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 5.9e-42 175.3 200 45.0
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.5e-40 169.9 168 47.0
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.2e-39 167.5 203 42.9
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 3.9e-38 162.5 174 44.3
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 2.2e-36 156.8 253 38.3
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 2.2e-36 156.8 250 36.0
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 3.7e-36 156.0 250 36.4
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 4.8e-36 155.6 250 35.6
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.4e-35 154.1 242 36.0
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 3.1e-35 152.9 184 42.9
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 3.1e-35 152.9 240 35.8
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 6.9e-35 151.8 242 36.8
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 1.7e-33 147.1 253 36.8
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 1.1e-32 144.4 248 35.9
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.1e-32 144.4 202 39.6
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.1e-29 134.4 156 42.9
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 1.3e-28 131.0 253 34.4
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 2.2e-28 130.2 237 34.2
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 4.8e-28 129.0 166 44.0
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 6.3e-28 128.6 239 34.7
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 1.9e-16 90.5 93 50.5
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.2e-10 71.2 71 46.5
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 3.5e-10 69.7 74 43.2
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 3.8e-09 66.2 67 49.3
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 5.2e-06 55.8 44 52.3


User provided reference genes

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