Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 2.6e-127 458.8 236 100.0
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 4.9e-94 348.2 234 74.8
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 3.2e-93 345.5 233 74.2
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.0e-91 340.5 234 72.6
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 1.3e-91 340.1 233 71.7
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 1.3e-91 340.1 234 72.6
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 2.3e-91 339.3 233 73.4
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 3.9e-91 338.6 234 70.5
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 1.9e-90 336.3 234 70.1
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 3.3e-90 335.5 233 70.4
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 7.4e-90 334.3 251 67.7
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 9.6e-90 334.0 234 70.1
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 6.9e-88 327.8 233 68.2
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 1.2e-87 327.0 234 70.5
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 2.0e-87 326.2 225 71.1
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 2.6e-87 325.9 234 69.2
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 2.6e-87 325.9 234 70.9
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 3.4e-87 325.5 234 70.1
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 5.8e-87 324.7 233 68.7
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 7.6e-87 324.3 234 68.8
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 1.3e-86 323.6 233 68.7
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 1.7e-86 323.2 233 68.7
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 1.7e-86 323.2 235 70.2
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 2.2e-86 322.8 232 69.8
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 3.8e-86 322.0 223 72.6
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 3.8e-86 322.0 234 70.5
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 6.5e-86 321.2 234 68.8
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 6.5e-86 321.2 234 68.4
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 1.4e-85 320.1 229 69.0
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 1.9e-85 319.7 232 69.4
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 2.5e-85 319.3 234 70.1
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 5.5e-85 318.2 233 67.8
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 1.6e-84 316.6 234 68.4
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 1.6e-84 316.6 237 66.2
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 2.7e-84 315.8 223 69.1
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 1.0e-83 313.9 233 67.8
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 3.0e-83 312.4 234 66.7
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 3.0e-83 312.4 235 66.8
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 3.0e-83 312.4 230 68.7
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 5.1e-83 311.6 222 68.9
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 6.7e-83 311.2 213 71.4
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 6.7e-83 311.2 228 67.1
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 8.7e-83 310.8 232 66.4
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 2.5e-82 309.3 212 70.8
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 7.4e-82 307.8 232 65.9
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 7.4e-82 307.8 228 66.2
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 7.4e-82 307.8 228 68.0
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 7.4e-82 307.8 232 65.5
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 2.2e-81 306.2 229 66.8
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 1.1e-80 303.9 235 64.3
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.1e-80 303.9 232 64.7
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 1.4e-80 303.5 225 66.2
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 2.4e-80 302.8 230 66.1
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 2.4e-80 302.8 230 66.1
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 3.1e-80 302.4 238 65.5
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 3.1e-80 302.4 225 69.3
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 4.1e-80 302.0 232 64.7
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 4.1e-80 302.0 229 66.4
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 5.3e-80 301.6 235 65.1
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 6.9e-80 301.2 232 64.7
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 2.0e-79 299.7 234 65.0
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 2.6e-79 299.3 234 67.1
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 2.6e-79 299.3 234 67.1
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 4.5e-79 298.5 226 65.9
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 5.9e-79 298.1 230 64.8
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 1.7e-78 296.6 229 64.2
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 2.2e-78 296.2 234 64.1
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 5.0e-78 295.0 230 64.8
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 5.0e-78 295.0 223 67.3
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 8.5e-78 294.3 235 63.0
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 8.5e-78 294.3 213 68.5
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 1.4e-77 293.5 230 64.3
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 1.9e-77 293.1 230 63.9
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 1.9e-77 293.1 230 63.9
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 2.5e-77 292.7 235 61.7
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 2.5e-77 292.7 230 63.5
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 7.2e-77 291.2 225 63.6
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 4.6e-76 288.5 226 63.7
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 7.9e-76 287.7 228 63.2
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.4e-75 287.0 213 65.7
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 2.3e-75 286.2 229 65.1
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 3.0e-75 285.8 231 62.3
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 3.9e-75 285.4 231 63.2
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 3.9e-75 285.4 233 62.7
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 3.9e-75 285.4 227 64.3
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 3.3e-74 282.3 225 63.6
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 9.7e-74 280.8 206 66.5
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 1.3e-73 280.4 228 61.0
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 6.3e-73 278.1 223 64.6
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 8.2e-73 277.7 234 60.3
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 3.1e-72 275.8 213 62.9
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 6.9e-72 274.6 224 61.6
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 2.0e-66 256.5 255 53.3
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 5.9e-63 245.0 223 58.3
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 2.2e-57 226.5 151 74.2
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 3.5e-55 219.2 155 69.0
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 5.9e-55 218.4 177 63.8
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 1.9e-53 213.4 220 51.4
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 2.2e-46 189.9 150 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 2.1e-44 183.3 226 44.2
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 4.0e-43 179.1 235 47.2
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 6.8e-43 178.3 211 41.7
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 2.6e-42 176.4 148 60.8
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 1.1e-40 171.0 136 61.0
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 7.7e-39 164.9 213 40.4
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 4.0e-35 152.5 214 37.9
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 4.4e-34 149.1 213 37.6
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 3.7e-33 146.0 217 35.0
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 1.6e-31 140.6 110 64.5
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 1.0e-30 137.9 118 59.3
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 5.6e-29 132.1 90 70.0
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 3.6e-28 129.4 162 46.9
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 8.3e-25 118.2 72 73.6
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 3.1e-19 99.8 225 30.2
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 1.6e-12 77.4 70 61.4
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 1.6e-12 77.4 70 61.4


User provided reference genes

Program Settings