Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.4e-179 632.9 318 100.0
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 4.4e-138 495.0 317 79.5
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 2.0e-127 459.5 318 73.9
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.5e-125 453.4 319 73.7
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.6e-124 449.9 332 71.1
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.1e-124 449.5 267 82.4
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 2.8e-124 449.1 267 82.8
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 3.6e-124 448.7 266 82.7
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 6.2e-124 448.0 319 71.8
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 1.8e-123 446.4 266 82.3
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.3e-123 446.0 330 70.6
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 4.0e-123 445.3 326 72.1
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.8e-123 444.5 330 70.3
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 6.8e-123 444.5 267 81.6
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 8.9e-123 444.1 330 70.3
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 8.9e-123 444.1 311 72.3
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 8.9e-123 444.1 315 73.3
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.2e-122 443.7 324 69.4
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 2.0e-122 443.0 339 69.9
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 2.0e-122 443.0 275 79.3
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 2.0e-122 443.0 266 81.2
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 2.6e-122 442.6 296 76.0
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.6e-122 442.6 330 70.0
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 3.4e-122 442.2 319 70.8
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 4.4e-122 441.8 311 72.0
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 1.3e-121 440.3 309 73.1
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.7e-121 439.9 267 80.9
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 2.2e-121 439.5 267 80.9
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 3.7e-121 438.7 267 80.9
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.7e-121 438.7 329 70.8
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 4.9e-121 438.3 333 70.0
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 6.4e-121 438.0 266 80.1
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.1e-120 437.2 331 71.3
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 1.9e-120 436.4 325 71.1
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 1.9e-120 436.4 268 78.7
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 2.4e-120 436.0 292 74.7
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 3.2e-120 435.6 265 80.8
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 3.2e-120 435.6 329 69.3
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 4.1e-120 435.3 270 78.9
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 4.1e-120 435.3 267 79.8
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 7.1e-120 434.5 329 69.0
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 9.2e-120 434.1 323 71.5
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.2e-119 433.7 314 71.3
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 1.6e-119 433.3 254 83.5
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.6e-119 433.3 266 80.5
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 1.6e-119 433.3 264 80.7
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 3.5e-119 432.2 266 78.9
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 1.7e-118 429.9 267 79.0
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 2.3e-118 429.5 281 76.2
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 5.1e-118 428.3 292 72.9
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 6.6e-118 427.9 267 79.8
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 1.5e-117 426.8 315 70.2
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 1.2e-116 423.7 257 80.9
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.1e-115 420.6 300 70.0
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 1.1e-115 420.6 327 70.0
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 1.4e-115 420.2 314 68.2
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 1.8e-115 419.9 289 74.0
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 3.1e-115 419.1 299 71.9
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 3.1e-115 419.1 266 77.4
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 4.0e-115 418.7 266 77.1
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 4.0e-115 418.7 333 69.1
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 8.9e-115 417.5 266 77.4
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 1.2e-114 417.2 308 69.2
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 2.0e-114 416.4 333 68.8
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 9.9e-114 414.1 319 67.4
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 2.2e-113 412.9 297 71.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 4.9e-113 411.8 297 70.7
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 5.4e-112 408.3 246 81.3
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 9.2e-112 407.5 277 75.1
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 3.5e-111 405.6 255 78.4
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 5.1e-110 401.7 256 76.6
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 5.6e-109 398.3 277 74.7
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.2e-108 397.1 302 68.2
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 1.1e-107 394.0 326 66.0
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 2.6e-106 389.4 226 83.6
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 1.0e-102 377.5 332 63.9
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 1.1e-101 374.0 246 74.4
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.6e-100 370.2 311 64.3
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 1.5e-98 363.6 286 67.5
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 1.1e-96 357.5 273 67.4
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.2e-95 354.0 212 80.2
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 8.7e-94 347.8 304 58.9
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 4.8e-92 342.0 203 80.8
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 1.1e-91 340.9 253 70.4
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.6e-87 327.0 267 59.9
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.9e-80 303.5 249 57.0
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.1e-77 294.3 242 58.7
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 5.0e-73 278.9 233 58.4
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 4.6e-71 272.3 242 62.8
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 4.6e-71 272.3 242 62.8
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 7.7e-66 255.0 153 83.0
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.3e-65 254.2 154 81.2
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 4.2e-64 249.2 178 70.8
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 5.3e-59 232.3 135 79.3
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 1.0e-54 218.0 250 50.8
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 2.6e-50 203.4 281 43.4
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 1.4e-43 181.0 124 72.6
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.6e-42 177.6 275 40.0
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 1.1e-40 171.4 112 75.0
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 1.0e-38 164.9 98 79.6
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 1.5e-37 161.0 339 32.4
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 6.6e-33 145.6 79 82.3
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 5.4e-27 125.9 86 69.8
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 3.4e-21 106.7 290 28.3
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 5.8e-21 105.9 269 29.0
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.1e-19 101.7 91 60.4
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 1.4e-19 101.3 96 57.3
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.6e-18 97.8 91 58.2
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.3e-09 68.2 271 26.2
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 3.0e-09 67.0 256 26.6
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.5e-08 64.7 304 25.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.9e-08 64.3 282 26.2
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.9e-08 64.3 282 26.2
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.9e-08 64.3 303 28.1
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.5e-08 63.9 45 75.6
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 2.5e-08 63.9 270 26.3
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 3.3e-08 63.5 265 27.5
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 4.3e-08 63.2 250 26.8
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 4.3e-08 63.2 278 25.2
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 5.6e-08 62.8 267 25.1
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 5.6e-08 62.8 269 24.5
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 5.6e-08 62.8 299 26.8
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 7.3e-08 62.4 298 23.8
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 9.5e-08 62.0 285 24.9
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 1.2e-07 61.6 256 25.4
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.6e-07 61.2 303 25.4
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.6e-07 61.2 279 26.2
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.1e-07 60.8 276 28.6
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.1e-07 60.8 356 25.0
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 2.1e-07 60.8 279 24.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.8e-07 60.5 302 25.2
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.8e-07 60.5 268 24.6
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 2.8e-07 60.5 254 25.6
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.8e-07 60.5 252 25.8
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 3.6e-07 60.1 248 26.2
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 3.6e-07 60.1 254 26.0
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 4.7e-07 59.7 270 24.8
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 6.2e-07 59.3 252 25.0
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 6.2e-07 59.3 254 25.2
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 8.1e-07 58.9 282 25.5
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.1e-06 58.5 330 24.2
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.1e-06 58.5 351 26.8
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.1e-06 58.5 353 25.5
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.1e-06 58.5 271 24.0
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.4e-06 58.2 254 25.2
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.4e-06 58.2 278 27.3
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.4e-06 58.2 282 25.2
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.4e-06 58.2 320 26.6
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.4e-06 58.2 256 25.0
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.4e-06 58.2 278 23.0
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.8e-06 57.8 250 24.4
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.8e-06 57.8 250 25.2
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 2.3e-06 57.4 256 25.0
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 3.1e-06 57.0 235 25.5
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.1e-06 57.0 235 25.1
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 3.1e-06 57.0 262 23.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 3.1e-06 57.0 277 23.5
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 3.1e-06 57.0 321 24.3
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 3.1e-06 57.0 259 24.7
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 3.1e-06 57.0 281 23.5
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 5.2e-06 56.2 170 27.6
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 5.2e-06 56.2 170 27.6
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 5.2e-06 56.2 298 23.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 5.2e-06 56.2 250 24.0
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 6.8e-06 55.8 232 25.0
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 8.9e-06 55.5 351 25.1
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 8.9e-06 55.5 254 25.6
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 8.9e-06 55.5 205 24.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 8.9e-06 55.5 257 24.9
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 8.9e-06 55.5 279 25.1


User provided reference genes

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