Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 3.1e-225 785.0 462 100.0
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.1e-36 158.7 335 39.1
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 1.1e-36 158.7 371 34.8
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 9.2e-36 155.6 318 37.4
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 2.0e-35 154.5 372 34.1
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.0e-34 152.1 372 34.1
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.3e-34 151.8 360 36.1
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 1.3e-34 151.8 375 34.4
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 6.6e-34 149.4 355 36.9
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 6.6e-34 149.4 330 35.5
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 8.6e-34 149.1 304 37.5
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.1e-33 148.7 361 33.8
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 7.3e-33 146.0 269 39.0
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 7.3e-33 146.0 319 35.4
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 8.1e-32 142.5 290 39.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 8.1e-32 142.5 298 38.6
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 8.1e-32 142.5 298 38.6
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.1e-31 142.1 283 37.8
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.4e-31 141.7 340 35.6
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 8.9e-31 139.0 168 45.8
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 2.0e-30 137.9 231 39.4
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.6e-30 137.5 235 40.9
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 3.4e-30 137.1 246 40.7
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 5.8e-30 136.3 311 36.3
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.3e-29 135.2 235 40.4
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.7e-29 134.8 365 35.3
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 2.9e-29 134.0 276 37.3
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.9e-29 133.3 375 33.3
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 6.4e-29 132.9 231 38.5
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.9e-28 131.3 398 30.7
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 3.2e-28 130.6 280 35.0
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.4e-28 129.8 358 31.8
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 7.1e-28 129.4 294 35.0
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 7.1e-28 129.4 267 36.0
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.2e-27 128.6 276 36.6
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.6e-27 128.3 348 33.6
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 2.1e-27 127.9 230 40.4
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 2.1e-27 127.9 216 40.7
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 2.7e-27 127.5 270 37.4
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 4.6e-27 126.7 277 35.4
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 6.0e-27 126.3 253 36.4
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 6.0e-27 126.3 198 39.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 6.0e-27 126.3 213 42.3
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 7.8e-27 125.9 213 41.3
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.0e-26 125.6 199 41.7
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.7e-26 124.8 378 30.7
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 5.1e-26 123.2 444 29.7
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.1e-25 122.1 265 33.6
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 1.9e-25 121.3 413 31.5
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 3.3e-25 120.6 238 39.1
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 5.6e-25 119.8 267 36.7
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 7.3e-25 119.4 266 33.5
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 1.2e-24 118.6 249 36.9
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.2e-24 118.6 333 33.9
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 2.8e-24 117.5 191 42.4
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 8.1e-24 115.9 329 34.0
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.4e-23 115.2 351 32.2
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.8e-23 114.8 305 34.4
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.1e-23 114.0 206 35.9
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 4.0e-23 113.6 244 37.3
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 5.2e-23 113.2 183 41.5
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 5.2e-23 113.2 265 36.2
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 6.8e-23 112.8 245 35.1
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.5e-22 111.7 318 31.1
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.4e-22 110.5 364 32.1
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 7.6e-22 109.4 275 33.5
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-21 108.6 328 31.4
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 3.8e-21 107.1 511 30.5
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 3.8e-21 107.1 146 43.8
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 3.8e-21 107.1 146 43.8
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 1.1e-20 105.5 221 37.6
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.9e-20 104.8 265 34.3
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 4.1e-20 103.6 232 34.9
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 9.2e-20 102.4 244 31.6
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.2e-19 102.1 224 34.8
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.6e-19 101.7 186 39.2
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 7.8e-19 99.4 204 37.7
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.3e-18 97.8 260 32.3
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 8.7e-18 95.9 204 36.8
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 1.1e-17 95.5 216 30.1
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.1e-17 95.5 86 54.7
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 3.3e-17 94.0 290 31.7
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 7.3e-17 92.8 391 30.7
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.6e-16 91.7 224 32.6
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 2.8e-16 90.9 249 30.5
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 6.2e-16 89.7 383 28.5
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 1.8e-15 88.2 225 29.8
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 2.4e-15 87.8 274 29.9
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 4.0e-15 87.0 296 29.1
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.2e-14 85.5 171 34.5
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 2.9e-13 80.9 292 27.4
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 6.4e-13 79.7 185 33.5
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.1e-12 79.0 297 29.6
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 1.9e-12 78.2 187 31.6
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 3.2e-12 77.4 287 29.3
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 7.1e-12 76.3 138 35.5
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.6e-11 75.1 169 30.8
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 3.5e-11 73.9 67 50.7
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.6e-11 73.6 163 28.8
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 7.8e-11 72.8 255 28.2
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 1.7e-10 71.6 132 35.6
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.7e-10 71.6 139 33.1
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.7e-10 71.6 147 33.3
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 6.6e-10 69.7 179 28.5
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 6.6e-10 69.7 131 32.8
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 6.6e-10 69.7 141 33.3
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 8.7e-10 69.3 132 34.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.1e-09 68.9 131 35.9
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.5e-09 68.6 265 26.8
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 1.9e-09 68.2 265 26.8
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 2.5e-09 67.8 141 31.2
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 2.5e-09 67.8 271 30.3
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.5e-09 67.8 138 35.5
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 2.5e-09 67.8 442 24.7
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 3.3e-09 67.4 137 33.6
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.3e-09 67.4 208 29.8
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 3.3e-09 67.4 143 30.8
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.3e-09 67.0 133 36.1
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.3e-09 67.0 177 28.2
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 4.3e-09 67.0 161 30.4
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 4.3e-09 67.0 131 34.4
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.3e-09 67.0 141 32.6
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.6e-09 66.6 134 33.6
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 7.3e-09 66.2 144 34.7
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 7.3e-09 66.2 127 36.2
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 9.6e-09 65.9 155 29.0
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 9.6e-09 65.9 157 28.7
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 9.6e-09 65.9 131 33.6
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 1.3e-08 65.5 139 30.9
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 1.3e-08 65.5 140 31.4
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 2.1e-08 64.7 137 30.7
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.1e-08 64.7 134 32.1
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.1e-08 64.7 132 35.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 2.1e-08 64.7 63 58.7
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 2.1e-08 64.7 131 35.1
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.8e-08 64.3 137 30.7
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.8e-08 64.3 134 32.1
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 2.8e-08 64.3 131 32.8
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 3.6e-08 63.9 139 31.7
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 3.6e-08 63.9 155 29.0
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.8e-08 63.5 131 32.1
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 6.2e-08 63.2 141 31.2
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 8.1e-08 62.8 131 29.8
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 1.1e-07 62.4 183 32.2
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 1.1e-07 62.4 131 33.6
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.4e-07 62.0 138 31.2
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.4e-07 62.0 138 32.6
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 1.8e-07 61.6 142 28.2
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 1.8e-07 61.6 197 27.9
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.4e-07 61.2 145 29.0
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 2.4e-07 61.2 143 31.5
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 3.1e-07 60.8 434 22.6
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 4.0e-07 60.5 143 32.9
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 5.3e-07 60.1 146 26.7
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 6.9e-07 59.7 150 27.3
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 9.0e-07 59.3 127 29.1
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 9.0e-07 59.3 143 28.0
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 9.0e-07 59.3 173 27.2
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 1.2e-06 58.9 145 31.0
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.2e-06 58.9 135 34.1
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 1.5e-06 58.5 144 29.2
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.5e-06 58.5 281 29.9
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 1.5e-06 58.5 132 29.5
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.6e-06 57.8 148 30.4
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 3.4e-06 57.4 138 30.4
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 3.4e-06 57.4 150 32.7
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 4.5e-06 57.0 150 27.3
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 4.5e-06 57.0 125 30.4
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 4.5e-06 57.0 139 28.8
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 5.8e-06 56.6 161 29.8
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 5.8e-06 56.6 149 27.5
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 5.8e-06 56.6 223 25.6
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 5.8e-06 56.6 142 30.3
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 7.6e-06 56.2 130 31.5
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 9.9e-06 55.8 137 29.9
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 9.9e-06 55.8 139 29.5
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 9.9e-06 55.8 168 32.7
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.9e-06 55.8 157 29.3


User provided reference genes

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