Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 1.6e-38 162.5 96 100.0
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 7.8e-14 80.5 97 53.6
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 1.0e-13 80.1 105 53.3
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.3e-13 79.7 87 55.2
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 3.9e-13 78.2 87 54.0
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 5.1e-13 77.8 82 53.7
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 8.6e-13 77.0 88 53.4
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.1e-12 76.6 84 54.8
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 1.1e-12 76.6 85 52.9
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 1.9e-12 75.9 84 54.8
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.9e-12 75.9 87 52.9
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 1.9e-12 75.9 87 54.0
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 1.9e-12 75.9 87 52.9
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 4.3e-12 74.7 85 52.9
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 4.3e-12 74.7 82 53.7
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 5.6e-12 74.3 85 54.1
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 5.6e-12 74.3 86 51.2
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 9.6e-12 73.6 93 50.5
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 9.6e-12 73.6 96 50.0
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 1.2e-11 73.2 83 51.8
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 1.6e-11 72.8 102 51.0
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.6e-11 72.8 102 51.0
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 2.1e-11 72.4 95 49.5
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 2.1e-11 72.4 82 53.7
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 2.1e-11 72.4 97 50.5
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 2.1e-11 72.4 92 53.3
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.1e-11 72.4 103 51.5
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.1e-11 72.4 83 53.0
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 2.8e-11 72.0 93 52.7
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 2.8e-11 72.0 101 44.6
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 3.6e-11 71.6 89 47.2
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 3.6e-11 71.6 95 49.5
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 4.7e-11 71.2 97 53.6
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 6.2e-11 70.9 86 53.5
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 6.2e-11 70.9 97 48.5
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 6.2e-11 70.9 79 50.6
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 6.2e-11 70.9 96 49.0
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 6.2e-11 70.9 99 50.5
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 8.1e-11 70.5 89 50.6
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 8.1e-11 70.5 89 51.7
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.1e-10 70.1 101 45.5
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 1.4e-10 69.7 84 51.2
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.4e-10 68.9 103 49.5
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 2.4e-10 68.9 82 47.6
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 2.4e-10 68.9 89 52.8
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.4e-10 68.9 84 51.2
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 3.1e-10 68.6 80 51.2
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 3.1e-10 68.6 106 48.1
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.1e-10 68.6 94 50.0
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 3.1e-10 68.6 93 48.4
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 3.1e-10 68.6 84 51.2
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 5.2e-10 67.8 83 48.2
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 8.9e-10 67.0 96 46.9
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 8.9e-10 67.0 95 47.4
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 8.9e-10 67.0 84 45.2
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 1.2e-09 66.6 89 46.1
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 1.5e-09 66.2 83 50.6
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 1.5e-09 66.2 88 45.5
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 3.4e-09 65.1 87 46.0
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 7.6e-09 63.9 83 45.8
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 7.6e-09 63.9 83 45.8
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 7.6e-09 63.9 96 45.8
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.3e-08 63.2 59 57.6
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.3e-08 63.2 83 45.8
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.3e-08 63.2 98 45.9
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.7e-08 62.8 93 46.2
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 1.7e-08 62.8 97 45.4
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.9e-08 62.0 102 45.1
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.9e-08 62.0 59 52.5
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.8e-08 61.6 63 52.4
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 6.4e-08 60.8 94 45.7
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 6.4e-08 60.8 81 48.1
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 1.4e-07 59.7 85 43.5
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 1.4e-07 59.7 71 49.3
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 1.9e-07 59.3 81 45.7
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 3.2e-07 58.5 30 86.7
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 4.2e-07 58.2 80 45.0
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 5.4e-07 57.8 80 45.0
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 5.4e-07 57.8 86 44.2
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 5.4e-07 57.8 83 49.4
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 7.1e-07 57.4 80 45.0
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 7.1e-07 57.4 82 40.2
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 1.6e-06 56.2 79 41.8
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 2.1e-06 55.8 80 42.5
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 2.1e-06 55.8 80 42.5
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 2.7e-06 55.5 30 73.3
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 4.6e-06 54.7 80 41.2
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 4.6e-06 54.7 80 41.2
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 6.0e-06 54.3 86 44.2
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 6.0e-06 54.3 95 44.2
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 7.8e-06 53.9 85 41.2
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 7.8e-06 53.9 94 43.6


User provided reference genes

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