Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 3.3e-77 291.6 144 100.0
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 2.1e-23 112.8 145 46.2
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 8.1e-23 110.9 143 44.8
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 3.1e-22 109.0 146 45.2
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 5.2e-22 108.2 143 42.7
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-21 107.1 143 44.1
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 4.4e-21 105.1 143 43.4
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.4e-21 105.1 143 43.4
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 5.8e-21 104.8 143 42.7
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 5.8e-21 104.8 143 45.5
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 2.9e-20 102.4 143 42.0
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 2.9e-20 102.4 143 41.3
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 1.4e-19 100.1 145 42.8
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 2.4e-19 99.4 143 42.0
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 7.1e-19 97.8 143 41.3
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 9.3e-19 97.4 143 42.7
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 1.2e-18 97.1 143 42.0
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 4.6e-18 95.1 144 41.7
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 4.6e-18 95.1 143 40.6
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 6.0e-18 94.7 144 41.7
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 6.0e-18 94.7 132 40.9
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.0e-17 94.0 143 42.0
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.7e-17 93.2 143 40.6
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 2.3e-17 92.8 143 41.3
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 3.9e-17 92.0 134 39.6
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.9e-17 92.0 143 37.8
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 6.6e-17 91.3 143 44.1
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 3.3e-16 89.0 143 39.9
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 2.1e-15 86.3 82 53.7
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.1e-14 84.0 143 37.1
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.1e-14 84.0 144 37.5
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 5.3e-14 81.6 143 35.7
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 9.0e-14 80.9 145 39.3
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.5e-13 80.1 143 38.5
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 5.8e-13 78.2 145 38.6
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 9.9e-13 77.4 143 37.1
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 9.9e-13 77.4 148 33.8
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 9.9e-13 77.4 143 39.9
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 9.9e-13 77.4 142 37.3
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 1.3e-12 77.0 136 38.2
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.3e-12 77.0 143 37.1
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 2.2e-12 76.3 147 38.8
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 3.8e-12 75.5 143 32.2
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.8e-12 75.5 141 36.2
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 6.4e-12 74.7 143 39.9
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.1e-11 73.9 137 34.3
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 2.4e-11 72.8 142 33.8
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.4e-11 72.8 143 36.4
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 2.4e-11 72.8 143 36.4
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 9.3e-11 70.9 143 35.0
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 2.1e-10 69.7 143 34.3
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.7e-10 69.3 133 36.8
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 3.5e-10 68.9 147 34.7
FvH4_5g34311 Fragaria vesca HOM05D005726 ORTHO05D001733 7.9e-10 67.8 38 73.7
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 1.0e-09 67.4 86 40.7
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 1.8e-09 66.6 146 37.0
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.3e-09 66.2 143 29.4
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 5.1e-09 65.1 87 42.5
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 5.1e-09 65.1 143 32.2
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 5.1e-09 65.1 145 35.2
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 6.7e-09 64.7 146 36.3
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 8.7e-09 64.3 146 36.3
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 8.7e-09 64.3 146 35.6
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 8.7e-09 64.3 152 34.9
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 8.7e-09 64.3 152 34.9
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 8.7e-09 64.3 150 34.7
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 8.7e-09 64.3 143 30.1
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 1.1e-08 63.9 143 28.7
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 1.5e-08 63.5 145 30.3
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 1.5e-08 63.5 143 30.8
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 4.3e-08 62.0 133 35.3
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 4.3e-08 62.0 143 28.0
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 5.6e-08 61.6 143 35.0
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 5.6e-08 61.6 146 35.6
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 9.6e-08 60.8 136 34.6
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 9.6e-08 60.8 152 32.9
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 9.6e-08 60.8 152 32.9
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 1.3e-07 60.5 143 31.5
Medtr3g117720 Medicago truncatula HOM05D005726 ORTHO05D001733 3.7e-07 58.9 83 39.8
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 3.7e-07 58.9 143 32.9
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 4.8e-07 58.5 137 31.4
Cfa005180 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.1e-06 57.4 120 33.3
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 1.1e-06 57.4 137 31.4
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 1.8e-06 56.6 126 34.9
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 1.8e-06 56.6 131 30.5
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 1.8e-06 56.6 143 31.5
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 1.8e-06 56.6 143 31.5
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 5.3e-06 55.1 137 30.7
Glyma.12G024300 Glycine max HOM05D005726 ORTHO05D001733 5.3e-06 55.1 89 37.1


User provided reference genes

Program Settings