Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 6.4e-285 983.4 497 100.0
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 9.7e-217 756.9 497 75.5
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 1.8e-215 752.7 497 72.4
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 2.1e-211 739.2 490 74.1
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 4.0e-210 734.9 490 73.7
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 5.7e-209 731.1 497 71.8
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.8e-208 728.8 490 72.0
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 8.2e-208 727.2 494 72.7
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 8.2e-208 727.2 493 71.6
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.4e-207 725.7 494 71.7
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 3.1e-207 725.3 483 73.9
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 1.2e-206 723.4 495 72.9
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.6e-206 723.0 490 72.7
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 2.7e-206 722.2 490 71.6
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 4.5e-206 721.5 486 71.6
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.0e-205 720.3 490 72.4
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 2.2e-205 719.2 495 71.3
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.9e-204 716.1 495 69.9
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.9e-204 716.1 487 70.0
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 4.2e-204 714.9 495 71.7
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 5.5e-204 714.5 495 70.1
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 9.4e-204 713.8 495 69.9
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 2.1e-203 712.6 475 73.5
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.6e-203 711.8 495 70.5
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 1.0e-202 710.3 495 69.5
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 2.3e-202 709.1 484 73.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 2.3e-202 709.1 468 72.6
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-201 706.8 510 68.4
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 2.2e-200 702.6 491 68.4
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.8e-200 701.4 510 67.8
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.8e-200 701.4 510 67.8
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.8e-200 701.4 510 67.8
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 6.3e-200 701.0 468 72.6
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 8.3e-200 700.7 493 68.4
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 1.4e-199 699.9 490 70.0
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 2.4e-199 699.1 495 68.5
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 4.1e-199 698.4 495 67.3
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.0e-198 696.0 495 68.3
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.5e-198 694.9 468 70.7
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 1.0e-197 693.7 495 67.1
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 2.9e-197 692.2 495 68.9
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 3.2e-196 688.7 493 67.3
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 4.2e-196 688.3 493 67.3
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 5.5e-196 688.0 496 69.2
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 7.2e-196 687.6 492 67.9
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 9.4e-196 687.2 496 68.8
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 1.2e-195 686.8 491 68.4
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 2.1e-195 686.0 484 69.2
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 3.6e-195 685.3 494 67.0
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 3.6e-195 685.3 494 67.0
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 4.7e-195 684.9 483 69.2
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 6.1e-195 684.5 496 66.1
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 6.1e-195 684.5 494 67.4
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 6.8e-194 681.0 484 68.4
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 1.5e-193 679.9 546 63.9
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 6.3e-192 674.5 546 63.4
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 2.4e-191 672.5 525 63.0
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.6e-190 669.8 495 67.1
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 3.5e-190 668.7 495 66.9
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 2.9e-189 665.6 494 66.4
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 5.0e-189 664.8 493 66.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 1.2e-187 660.2 484 66.5
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 2.1e-187 659.4 484 65.9
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 8.0e-187 657.5 453 68.9
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 4.0e-186 655.2 484 65.3
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 8.9e-186 654.1 482 65.6
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 1.1e-183 647.1 457 67.8
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 1.1e-183 647.1 438 73.3
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 1.4e-183 646.7 484 63.8
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 9.2e-183 644.0 464 68.1
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 9.2e-183 644.0 530 63.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 3.0e-181 639.0 502 65.3
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 1.5e-177 626.7 484 61.6
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 2.9e-176 622.5 603 56.1
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 8.3e-176 620.9 528 59.8
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 1.9e-175 619.8 477 64.4
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 7.8e-174 614.4 504 62.3
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 7.8e-174 614.4 524 60.1
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 4.3e-172 608.6 468 66.9
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 3.1e-170 602.4 495 61.8
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 5.8e-169 598.2 493 60.6
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 1.6e-166 590.1 411 71.0
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 3.3e-164 582.4 410 68.3
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.4e-159 567.0 427 65.1
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 9.2e-159 564.3 512 58.0
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 6.2e-155 551.6 518 53.9
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.7e-152 543.5 394 66.0
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 1.8e-146 523.5 482 55.2
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 1.8e-146 523.5 396 63.9
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 7.1e-143 511.5 484 53.1
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 1.6e-142 510.4 334 76.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 4.6e-142 508.8 495 54.5
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 1.9e-140 503.4 335 74.3
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 4.3e-140 502.3 484 56.4
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 1.3e-139 500.7 334 76.3
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 5.3e-138 495.4 483 50.3
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 3.4e-129 466.1 689 41.4
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 5.8e-129 465.3 446 53.8
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 1.2e-126 457.6 524 51.1
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.5e-124 450.7 468 52.6
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 4.3e-124 449.1 988 32.9
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 6.9e-114 415.2 315 67.0
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 3.9e-109 399.4 347 58.5
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 1.9e-103 380.6 498 46.2
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 2.8e-99 366.7 431 50.8
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.8e-85 320.9 251 63.7
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.6e-78 296.6 201 75.6
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 8.0e-78 295.4 546 37.2
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 2.9e-72 276.9 305 52.8
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 2.0e-68 264.2 481 37.6
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.6e-63 246.1 201 64.7
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 7.5e-60 235.7 183 59.0
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 7.5e-52 209.1 161 61.5
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.1e-42 178.7 156 60.9
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 4.7e-38 163.3 110 73.6
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 5.4e-34 149.8 113 55.8
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 6.2e-30 136.3 150 48.7
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 6.7e-24 116.3 60 85.0
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 9.0e-21 105.9 82 67.1
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.0e-16 92.4 101 47.5
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.8e-16 91.7 64 68.8
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.3e-14 85.5 43 88.4
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 1.5e-12 78.6 79 43.0
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 2.6e-12 77.8 50 66.0
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 1.4e-10 72.0 52 71.2
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 5.5e-10 70.1 68 57.4
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.7e-08 62.8 283 23.7
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 8.7e-08 62.8 256 24.2
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 1.1e-07 62.4 224 24.6
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.1e-07 62.4 244 24.6
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.1e-07 62.4 244 24.6
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.1e-07 62.4 280 23.6
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 3.3e-07 60.8 284 25.0
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 9.7e-07 59.3 226 25.7
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 2.2e-06 58.2 219 26.0
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 3.7e-06 57.4 191 28.3
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 3.7e-06 57.4 209 26.3
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.8e-06 57.0 205 26.3
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.8e-06 57.0 205 26.3
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 4.8e-06 57.0 211 26.5
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.3e-06 56.6 199 29.1
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 6.3e-06 56.6 218 27.1
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 6.3e-06 56.6 209 28.2


User provided reference genes

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