Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3791 Punica granatum HOM05D008363 ORTHO05D010508 3.1e-110 401.7 192 100.0
TWI60G0018 Tripterygium wilfordii HOM05D008363 ORTHO05D010508 4.2e-59 231.9 161 65.2
Ciclev10013884m.g Citrus clementina HOM05D008363 ORTHO05D010508 3.1e-54 215.7 166 59.0
Prupe.5G035100 Prunus persica HOM05D008363 ORTHO05D010508 6.9e-54 214.5 163 60.7
Cpa.g.sc227.8 Carica papaya HOM05D008363 ORTHO05D010508 2.2e-52 209.5 175 58.3
FAN04G2847 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.9e-51 206.5 153 62.1
FAN08G0799 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.9e-51 206.5 153 62.1
FAN18G1001 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.9e-51 206.5 153 62.1
FAN13G1991 Fragaria x ananassa HOM05D008363 ORTHO05D010508 2.5e-51 206.1 172 57.6
FvH4_5g22141 Fragaria vesca HOM05D008363 ORTHO05D010508 5.5e-51 204.9 153 61.4
RcHm_v2.0_Chr7g0209801 Rosa chinensis HOM05D008363 ORTHO05D010508 7.2e-51 204.5 163 58.9
CsaV3_3G001670 Cucumis sativus L. HOM05D008363 ORTHO05D010508 1.2e-50 203.8 159 55.3
Thecc.03G227000 Theobroma cacao HOM05D008363 ORTHO05D010508 1.2e-50 203.8 172 58.7
Duzib084G1116 Durio zibethinus HOM05D008363 ORTHO05D010508 1.8e-49 199.9 175 58.3
PGR031G1477 Punica granatum HOM05D008363 ORTHO05D010508 5.1e-49 198.4 157 61.8
COL.COLO4_17025 Corchorus olitorius HOM05D008363 ORTHO05D010508 5.7e-48 194.9 173 54.9
Actinidia14803 Actinidia chinensis HOM05D008363 ORTHO05D010508 2.2e-47 193.0 163 60.1
TAR636G2722 Trochodendron aralioides HOM05D008363 ORTHO05D010508 2.4e-46 189.5 193 46.1
CANSAT21G1194 Cannabis sativa HOM05D008363 ORTHO05D010508 3.1e-46 189.1 156 58.3
Manes.15G182300 Manihot esculenta HOM05D008363 ORTHO05D010508 9.1e-46 187.6 159 57.2
Aqoxy5G00023 Aquilegia oxysepala HOM05D008363 ORTHO05D010508 1.2e-45 187.2 163 53.4
Duzib205G1194 Durio zibethinus HOM05D008363 ORTHO05D010508 1.5e-45 186.8 165 55.8
Ca_06083_v3 Cicer arietinum L. HOM05D008363 ORTHO05D010508 1.3e-44 183.7 168 52.4
Psat2g136320 Pisum sativum HOM05D008363 ORTHO05D010508 1.3e-44 183.7 164 52.4
Gohir.A03G000300 Gossypium hirsutum HOM05D008363 ORTHO05D010508 2.9e-44 182.6 182 50.5
Gohir.D03G171900 Gossypium hirsutum HOM05D008363 ORTHO05D010508 3.8e-44 182.2 182 50.5
Hma1.2p1_0303F.1_g119070 Hydrangea macrophylla HOM05D008363 ORTHO05D010508 1.1e-43 180.6 169 54.4
Potri.001G141900 Populus trichocarpa HOM05D008363 ORTHO05D010508 1.1e-43 180.6 167 53.9
Glyma.09G204700 Glycine max HOM05D008363 ORTHO05D010508 1.9e-43 179.9 162 51.9
Dinv28961 Davidia involucrata HOM05D008363 ORTHO05D010508 2.5e-43 179.5 161 54.0
MD16G1273800 Malus domestica HOM05D008363 ORTHO05D010508 1.8e-41 173.3 148 57.4
TAR633G2165 Trochodendron aralioides HOM05D008363 ORTHO05D010508 8.2e-39 164.5 174 48.3
MD06G1034800 Malus domestica HOM05D008363 ORTHO05D010508 1.8e-38 163.3 157 54.1
Migut.A01011 Erythranthe guttata HOM05D008363 ORTHO05D010508 4.1e-38 162.2 165 50.9
Oeu006320.1 Olea europaea HOM05D008363 ORTHO05D010508 2.6e-37 159.5 170 45.9
Manes.05G195161 Manihot esculenta HOM05D008363 ORTHO05D010508 4.5e-37 158.7 153 48.4
Potri.014G146500 Populus trichocarpa HOM05D008363 ORTHO05D010508 9.4e-35 151.0 152 48.0
DCAR_024961 Daucus carota HOM05D008363 ORTHO05D010508 1.8e-33 146.7 178 43.8
Cc08_g02830 Coffea canephora HOM05D008363 ORTHO05D010508 5.2e-33 145.2 186 43.0
CSS0023279 Camellia sinensis var. sinensis HOM05D008363 ORTHO05D010508 1.8e-30 136.7 164 47.6
CSS0031173 Camellia sinensis var. sinensis HOM05D008363 ORTHO05D010508 1.8e-30 136.7 164 47.6
Solyc08g076887.1 Solanum lycopersicum HOM05D008363 ORTHO05D010508 8.8e-25 117.9 128 43.0
MBI18_g13989_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.3e-23 111.7 117 42.7
Ciclev10023626m.g Citrus clementina HOM05D008363 ORTHO05D010508 1.1e-22 110.9 175 36.6
DCAR_005636 Daucus carota HOM05D008363 ORTHO05D010508 1.8e-22 110.2 153 40.5
DCAR_008265 Daucus carota HOM05D008363 ORTHO05D010508 3.8e-20 102.4 151 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 4.0e-17 92.4 155 35.5
Haze_08219 Corylus avellana HOM05D008363 ORTHO05D010508 5.4e-14 82.0 157 31.8
ECA240G1797 Erigeron canadensis HOM05D002571 ORTHO05D002868 5.4e-14 82.0 156 33.3
MELO3C013848.2 Cucumis melo HOM05D008363 ORTHO05D010508 2.7e-13 79.7 51 64.7
Glyma.01G018200 Glycine max HOM05D008363 ORTHO05D010508 2.7e-13 79.7 78 46.2
Lsat_1_v5_gn_6_79301 Lactuca sativa HOM05D008363 ORTHO05D010508 4.5e-13 79.0 162 31.5
AagrBONN_evm.TU.Sc2ySwM_117.1414 Anthoceros agrestis HOM05D016224 ORTHO05D010508 7.8e-13 78.2 154 28.6
SMO239G0014 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 7.8e-13 78.2 163 25.2
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 1.0e-12 77.8 156 28.8
ClCG10G001570 Citrullus lanatus HOM05D000344 ORTHO05D003292 2.3e-12 76.6 84 42.9
Mapoly0095s0067 Marchantia polymorpha HOM05D008363 ORTHO05D010508 1.5e-11 73.9 171 27.5
DCAR_029247 Daucus carota HOM05D000085 ORTHO05D011292 1.9e-11 73.6 176 26.7
Dinv25219 Davidia involucrata HOM05D008363 ORTHO05D010508 2.5e-11 73.2 62 54.8
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 4.3e-11 72.4 155 29.0
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 7.3e-11 71.6 166 28.9
Medtr5g030350 Medicago truncatula HOM05D008363 ORTHO05D010508 7.3e-11 71.6 128 35.2
Cfa012447 Carpinus fangiana HOM05D000816 ORTHO05D010508 9.5e-11 71.2 160 30.0
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 1.2e-10 70.9 156 28.2
Gohir.D10G199700 Gossypium hirsutum HOM05D000085 ORTHO05D006184 2.8e-10 69.7 156 26.9
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 4.7e-10 68.9 150 28.0
SMO230G0025 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 4.7e-10 68.9 169 26.6
Gorai.011G223900 Gossypium raimondii HOM05D000085 ORTHO05D006184 6.1e-10 68.6 156 26.9
Gorai.001G043200 Gossypium raimondii HOM05D000085 ORTHO05D006184 1.0e-09 67.8 166 25.9
Manes.01G176300 Manihot esculenta HOM05D000085 ORTHO05D006184 1.0e-09 67.8 167 26.9
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 1.4e-09 67.4 156 28.2
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.4e-09 67.4 165 27.3
CiPaw.13G018100 Carya illinoinensis HOM05D000085 ORTHO05D006184 1.8e-09 67.0 155 29.0
Duzib084G0653 Durio zibethinus HOM05D008363 ORTHO05D010508 1.8e-09 67.0 63 58.7
Ciclev10003174m.g Citrus clementina HOM05D000085 ORTHO05D011292 2.3e-09 66.6 190 26.8
Gohir.A07G036650 Gossypium hirsutum HOM05D000085 ORTHO05D006184 2.3e-09 66.6 166 25.9
Thecc.09G256900 Theobroma cacao HOM05D000085 ORTHO05D006184 2.3e-09 66.6 166 29.5
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.1e-09 66.2 169 27.2
TWI38G0146 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 6.8e-09 65.1 144 29.9
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 6.8e-09 65.1 147 29.9
AagrBONN_evm.TU.Sc2ySwM_344.1186 Anthoceros agrestis HOM05D008363 ORTHO05D010508 8.9e-09 64.7 161 29.2
CANSAT56G3617 Cannabis sativa HOM05D000085 ORTHO05D001756 8.9e-09 64.7 153 33.3
FAN06G0172 Fragaria x ananassa HOM05D000085 ORTHO05D006184 8.9e-09 64.7 160 26.2
FAN06G0213 Fragaria x ananassa HOM05D000085 ORTHO05D006184 8.9e-09 64.7 160 26.2
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.2e-08 64.3 167 25.7
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.2e-08 64.3 159 28.3
Cfa018397 Carpinus fangiana HOM05D000085 ORTHO05D009791 2.0e-08 63.5 176 21.6
Duzib128G0691 Durio zibethinus HOM05D000085 ORTHO05D006184 2.0e-08 63.5 159 26.4
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 2.0e-08 63.5 172 26.2
AagrBONN_evm.TU.Sc2ySwM_368.1005 Anthoceros agrestis HOM05D000085 ORTHO05D001756 2.6e-08 63.2 164 28.7
HanXRQChr04g0095301 Helianthus annuus HOM05D000085 ORTHO05D001756 2.6e-08 63.2 182 29.1
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 2.6e-08 63.2 172 29.1
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.6e-08 63.2 155 25.2
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 2.6e-08 63.2 146 30.1
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 3.4e-08 62.8 193 24.9
Duzib168G1166 Durio zibethinus HOM05D000085 ORTHO05D006184 4.4e-08 62.4 166 25.3
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 5.8e-08 62.0 160 26.2
Phvul.009G133000 Phaseolus vulgaris HOM05D000085 ORTHO05D009791 5.8e-08 62.0 172 22.1
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 5.8e-08 62.0 161 23.0
PGR119G1958 Punica granatum HOM05D000085 ORTHO05D006184 5.8e-08 62.0 161 27.3
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 7.5e-08 61.6 153 28.8
COL.COLO4_32861 Corchorus olitorius HOM05D000085 ORTHO05D006184 9.8e-08 61.2 168 24.4
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 9.8e-08 61.2 160 26.2
Sopen12g023200 Solanum pennellii HOM05D000085 ORTHO05D001756 9.8e-08 61.2 165 29.1
GSVIVG01022918001 Vitis vinifera HOM05D000085 ORTHO05D011292 9.8e-08 61.2 164 23.8
Duzib093G0943 Durio zibethinus HOM05D000085 ORTHO05D009791 1.3e-07 60.8 165 21.8
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.3e-07 60.8 160 26.2
Gohir.A10G191900 Gossypium hirsutum HOM05D000085 ORTHO05D006184 1.3e-07 60.8 167 25.7
Lsat_1_v5_gn_9_119161 Lactuca sativa HOM05D000085 ORTHO05D011292 1.3e-07 60.8 167 27.5
Sed0020592 Sechium edule HOM05D000085 ORTHO05D006184 1.3e-07 60.8 149 30.9
CANSAT56G0670 Cannabis sativa HOM05D000085 ORTHO05D001756 1.7e-07 60.5 177 26.0
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.7e-07 60.5 156 23.7
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.7e-07 60.5 156 23.7
FvH4_2g15260 Fragaria vesca HOM05D000085 ORTHO05D009791 2.2e-07 60.1 165 20.6
FAN15G3404 Fragaria x ananassa HOM05D000085 ORTHO05D009791 2.2e-07 60.1 165 20.6
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 2.2e-07 60.1 165 22.4
VMungo0647G1792 Vigna mungo HOM05D000085 ORTHO05D006184 2.2e-07 60.1 148 27.7
Haze_25891 Corylus avellana HOM05D000085 ORTHO05D001756 2.9e-07 59.7 165 27.9
FAN27G0973 Fragaria x ananassa HOM05D000085 ORTHO05D009791 2.9e-07 59.7 165 20.6
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 2.9e-07 59.7 167 26.9
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 3.7e-07 59.3 153 26.8
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 4.9e-07 58.9 151 25.8
Solyc12g044840.2 Solanum lycopersicum HOM05D000085 ORTHO05D001756 4.9e-07 58.9 163 29.4
VMungo1309G2437 Vigna mungo HOM05D000085 ORTHO05D009791 4.9e-07 58.9 173 22.5
AagrBONN_evm.TU.Sc2ySwM_117.1415 Anthoceros agrestis HOM05D016224 ORTHO05D010508 6.4e-07 58.5 150 24.7
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 6.4e-07 58.5 162 22.8
Pp3c24_19020 Physcomitrium patens HOM05D026724 ORTHO05D026055 6.4e-07 58.5 143 25.9
arahy.Tifrunner.gnm1.ann1.NCK985 Arachis hypogaea HOM05D000085 ORTHO05D009791 8.3e-07 58.2 174 21.3
FAN08G2425 Fragaria x ananassa HOM05D000085 ORTHO05D011292 8.3e-07 58.2 168 25.0
Glyma.06G120400 Glycine max HOM05D000085 ORTHO05D009791 8.3e-07 58.2 173 20.8
Prupe.7G212500 Prunus persica HOM05D000085 ORTHO05D001756 8.3e-07 58.2 152 27.6
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 8.3e-07 58.2 159 19.5
SMO356G0621 Selaginella moellendorffii HOM05D000085 ORTHO05D001756 8.3e-07 58.2 142 28.2
Actinidia01698 Actinidia chinensis HOM05D000085 ORTHO05D006184 1.1e-06 57.8 171 21.6
Haze_02957 Corylus avellana HOM05D000085 ORTHO05D006184 1.1e-06 57.8 164 25.6
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 1.1e-06 57.8 156 26.9
Phvul.008G204900 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 1.1e-06 57.8 147 26.5
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 1.1e-06 57.8 170 20.6
BraA01t04028Z Brassica rapa HOM05D000085 ORTHO05D001756 1.4e-06 57.4 164 28.0
DCAR_008781 Daucus carota HOM05D000085 ORTHO05D009949 1.4e-06 57.4 156 26.9
Gohir.D10G062500 Gossypium hirsutum HOM05D000085 ORTHO05D001756 1.4e-06 57.4 153 32.0
Gorai.011G066500 Gossypium raimondii HOM05D000085 ORTHO05D001756 1.4e-06 57.4 153 32.0
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 1.4e-06 57.4 159 26.4
MD15G1204500 Malus domestica HOM05D000085 ORTHO05D001756 1.4e-06 57.4 152 26.3
Sed0014409 Sechium edule HOM05D000085 ORTHO05D006184 1.4e-06 57.4 154 29.9
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 1.4e-06 57.4 175 20.0
Dinv42303 Davidia involucrata HOM05D000085 ORTHO05D001756 1.9e-06 57.0 149 29.5
Hma1.2p1_1711F.1_g298710 Hydrangea macrophylla HOM05D000085 ORTHO05D006184 1.9e-06 57.0 148 29.1
CiPaw.03G217900 Carya illinoinensis HOM05D000085 ORTHO05D001756 2.4e-06 56.6 163 27.6
Gohir.A10G061200 Gossypium hirsutum HOM05D000085 ORTHO05D001756 2.4e-06 56.6 153 32.0
FvH4_6g33080 Fragaria vesca HOM05D000085 ORTHO05D001756 3.2e-06 56.2 153 30.1
FAN02G4222 Fragaria x ananassa HOM05D000085 ORTHO05D001756 3.2e-06 56.2 153 30.1
FAN05G2433 Fragaria x ananassa HOM05D000085 ORTHO05D001756 3.2e-06 56.2 153 30.1
FAN09G4712 Fragaria x ananassa HOM05D000085 ORTHO05D001756 3.2e-06 56.2 153 30.1
FAN14G0886 Fragaria x ananassa HOM05D000085 ORTHO05D001756 3.2e-06 56.2 153 30.1
Glyma.13G036300 Glycine max HOM05D000085 ORTHO05D009791 3.2e-06 56.2 64 28.1
Psat0s2703g0120 Pisum sativum HOM05D000085 ORTHO05D006184 3.2e-06 56.2 168 25.0
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 3.2e-06 56.2 168 23.2
AUR62033871 Chenopodium quinoa HOM05D000085 ORTHO05D009949 4.1e-06 55.8 154 28.6
AUR62040100 Chenopodium quinoa HOM05D000085 ORTHO05D009949 4.1e-06 55.8 154 28.6
MD09G1194900 Malus domestica HOM05D000085 ORTHO05D001756 4.1e-06 55.8 156 29.5
BraA08t32144Z Brassica rapa HOM05D000085 ORTHO05D001756 5.4e-06 55.5 160 29.4
Ca_23305_v3 Cicer arietinum L. HOM05D000085 ORTHO05D001756 5.4e-06 55.5 157 29.3
DCAR_016168 Daucus carota HOM05D000085 ORTHO05D001756 5.4e-06 55.5 152 29.6
PSO675G7983 Papaver somniferum HOM05D000085 ORTHO05D001756 5.4e-06 55.5 154 29.9
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.4e-06 55.5 165 25.5
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 7.0e-06 55.1 163 25.8
ECA236G4574 Erigeron canadensis HOM05D000085 ORTHO05D006184 7.0e-06 55.1 121 28.1
Prupe.3G051500 Prunus persica HOM05D000085 ORTHO05D001756 7.0e-06 55.1 153 30.1
PGR031G0712 Punica granatum HOM05D000085 ORTHO05D006184 7.0e-06 55.1 165 24.2
RcHm_v2.0_Chr2g0142801 Rosa chinensis HOM05D000085 ORTHO05D001756 7.0e-06 55.1 153 30.7
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 9.2e-06 54.7 138 24.6
CAN.G1389.4 Capsicum annuum HOM05D000085 ORTHO05D001756 9.2e-06 54.7 168 29.2
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 9.2e-06 54.7 149 24.2
Medtr3g088855 Medicago truncatula HOM05D000085 ORTHO05D009791 9.2e-06 54.7 64 25.0


User provided reference genes

Program Settings