Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.3e-49 198.7 111 100.0
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.1e-22 110.2 73 75.3
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 2.4e-22 109.0 110 56.4
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-21 106.7 76 64.5
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 2.6e-21 105.5 76 64.5
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.4e-21 105.1 110 52.7
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 3.4e-21 105.1 75 64.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.0e-20 103.6 85 60.0
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.2e-20 102.4 87 57.5
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 3.8e-20 101.7 80 63.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.9e-20 101.3 77 64.9
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 6.5e-20 100.9 76 63.2
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.5e-20 100.9 75 65.3
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 6.5e-20 100.9 99 53.5
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 8.4e-20 100.5 75 65.3
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.1e-19 100.1 75 66.7
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.4e-19 99.8 87 60.9
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.4e-19 99.8 111 47.7
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-19 99.4 82 62.2
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.9e-19 99.4 75 60.0
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-19 98.6 75 64.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.2e-19 98.6 74 63.5
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 4.2e-19 98.2 75 62.7
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.2e-19 98.2 83 57.8
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 5.5e-19 97.8 73 61.6
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.3e-19 97.1 68 66.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.3e-19 97.1 74 60.8
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.6e-18 96.3 82 62.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.1e-18 95.9 85 55.3
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.7e-18 95.5 82 61.0
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.7e-18 95.5 82 61.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 3.5e-18 95.1 76 63.2
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 4.6e-18 94.7 66 68.2
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.0e-18 94.4 99 54.5
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 6.0e-18 94.4 78 61.5
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 7.9e-18 94.0 75 61.3
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.0e-17 93.6 87 59.8
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.8e-17 92.8 69 60.9
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.8e-17 92.8 70 62.9
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.8e-17 92.8 110 51.8
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 3.9e-17 91.7 75 61.3
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 5.1e-17 91.3 111 47.7
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.7e-17 90.9 79 55.7
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 6.7e-17 90.9 73 56.2
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.7e-17 90.5 74 55.4
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 8.7e-17 90.5 84 57.1
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.7e-17 90.5 82 53.7
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.1e-16 90.1 86 51.2
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-16 90.1 71 60.6
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.5e-16 89.7 111 47.7
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 2.5e-16 89.0 86 47.7
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 3.3e-16 88.6 67 58.2
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.3e-16 88.2 77 55.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 4.3e-16 88.2 84 56.0
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.3e-16 88.2 69 58.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 5.7e-16 87.8 71 62.0
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 5.7e-16 87.8 82 53.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 7.4e-16 87.4 85 56.5
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.4e-16 87.4 85 56.5
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 9.7e-16 87.0 86 50.0
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 9.7e-16 87.0 71 59.2
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.3e-15 86.7 75 60.0
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.6e-15 86.3 71 59.2
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.6e-15 86.3 77 51.9
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.6e-15 86.3 69 60.9
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.2e-15 85.9 86 47.7
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.2e-15 85.9 81 53.1
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.2e-15 85.9 88 53.4
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.8e-15 85.5 80 53.8
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.7e-15 85.1 82 53.7
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 3.7e-15 85.1 78 55.1
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.8e-15 84.7 76 61.8
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 4.8e-15 84.7 84 50.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 8.2e-15 84.0 65 67.7
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.2e-15 84.0 85 55.3
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-14 83.6 61 67.2
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.1e-14 83.6 68 58.8
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.8e-14 82.8 110 43.6
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-14 82.8 73 57.5
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.4e-14 82.4 64 68.8
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 2.4e-14 82.4 69 56.5
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 2.4e-14 82.4 73 56.2
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 2.4e-14 82.4 81 46.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 3.1e-14 82.0 68 54.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 4.1e-14 81.6 68 55.9
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.1e-14 81.6 83 54.2
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.3e-14 81.3 67 53.7
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 5.3e-14 81.3 64 60.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.3e-14 81.3 64 68.8
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 6.9e-14 80.9 116 44.8
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 6.9e-14 80.9 89 49.4
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 9.0e-14 80.5 73 57.5
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.2e-13 80.1 69 58.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.2e-13 80.1 64 59.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.5e-13 79.7 68 55.9
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.5e-13 79.7 68 55.9
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.5e-13 79.7 86 52.3
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.6e-13 79.0 68 55.9
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.6e-13 79.0 83 50.6
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 2.6e-13 79.0 81 53.1
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.4e-13 78.6 64 60.9
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 3.4e-13 78.6 88 52.3
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.5e-13 78.2 66 57.6
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 5.9e-13 77.8 69 50.7
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 5.9e-13 77.8 75 49.3
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 7.6e-13 77.4 80 47.5
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 7.6e-13 77.4 84 54.8
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.0e-12 77.0 64 59.4
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.0e-12 77.0 64 59.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.3e-12 76.6 83 51.8
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.3e-12 76.6 66 53.0
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.7e-12 76.3 55 58.2
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.7e-12 76.3 76 53.9
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 2.2e-12 75.9 68 55.9
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 2.2e-12 75.9 74 54.1
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.2e-12 75.9 84 47.6
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.9e-12 75.5 62 51.6
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.9e-12 75.5 61 65.6
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.5e-12 74.3 72 55.6
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.4e-11 73.2 75 44.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.4e-11 73.2 83 45.8
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.4e-11 73.2 83 45.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.4e-11 73.2 82 53.7
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.9e-11 72.8 82 43.9
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.9e-11 72.8 64 53.1
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.9e-11 72.8 61 57.4
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 4.2e-11 71.6 71 52.1
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.2e-11 71.6 61 59.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.5e-11 71.2 65 52.3
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 7.2e-11 70.9 51 66.7
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-10 70.1 83 44.6
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.1e-10 69.3 60 56.7
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.7e-10 68.9 51 60.8
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 7.9e-10 67.4 84 44.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.9e-10 67.4 71 56.3
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-09 67.0 63 54.0
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.8e-09 66.2 75 46.7
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.3e-09 65.9 63 49.2
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.0e-09 65.5 38 76.3
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.0e-09 65.5 70 51.4
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.7e-09 64.3 70 44.3
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.3e-08 62.0 40 72.5
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.3e-08 62.0 78 44.9
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.7e-08 60.5 62 58.1
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 9.7e-08 60.5 46 63.0
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 2.2e-07 59.3 61 52.5
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.7e-07 58.5 44 59.1
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 9.1e-06 53.9 41 58.5


User provided reference genes

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