Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 0.0e+00 2791.1 1289 100.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.9e-193 679.9 611 56.6
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 8.0e-138 496.1 381 63.3
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.0e-81 307.8 756 31.1
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.0e-76 293.1 405 42.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.7e-75 287.3 412 42.5
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 4.5e-64 251.1 148 79.7
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 4.2e-54 218.0 154 66.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.7e-53 214.5 138 70.3
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.1e-53 214.2 140 69.3
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 1.0e-52 213.4 145 68.3
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 3.9e-52 211.5 141 68.8
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 3.9e-52 211.5 138 68.8
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 8.8e-52 210.3 144 66.0
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 9.7e-51 206.8 138 67.4
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.7e-50 206.1 151 64.2
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.7e-50 206.1 141 66.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 4.8e-50 204.5 145 66.2
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.4e-49 203.0 151 65.6
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.8e-49 202.6 144 65.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.8e-49 202.6 148 63.5
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 2.4e-49 202.2 138 65.9
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.4e-49 202.2 148 64.2
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.1e-49 201.8 133 69.2
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 5.3e-49 201.1 138 66.7
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 5.3e-49 201.1 145 64.8
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 5.3e-49 201.1 148 64.9
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 5.3e-49 201.1 132 66.7
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 7.0e-49 200.7 141 64.5
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 9.1e-49 200.3 140 65.0
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 9.1e-49 200.3 138 65.9
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 9.1e-49 200.3 138 65.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 9.1e-49 200.3 145 63.4
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 9.1e-49 200.3 139 70.5
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.0e-48 199.1 139 67.6
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 2.0e-48 199.1 134 66.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 2.6e-48 198.7 119 73.9
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 2.6e-48 198.7 147 61.2
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.6e-48 198.7 139 67.6
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 3.5e-48 198.4 138 65.2
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 3.5e-48 198.4 138 63.8
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 4.5e-48 198.0 158 59.5
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 4.5e-48 198.0 145 62.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.5e-48 198.0 138 65.9
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 4.5e-48 198.0 139 62.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 5.9e-48 197.6 132 68.2
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 5.9e-48 197.6 120 70.8
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 7.7e-48 197.2 135 66.7
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.0e-47 196.8 127 66.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.0e-47 196.8 134 68.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.7e-47 196.1 145 61.4
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.2e-47 195.7 122 70.5
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.9e-47 195.3 130 66.9
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.1e-46 193.4 145 63.4
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-46 193.4 132 65.2
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.5e-46 192.2 132 65.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 3.2e-46 191.8 140 63.6
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.2e-46 191.4 134 62.7
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 5.5e-46 191.0 136 64.0
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 5.5e-46 191.0 129 67.4
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 5.5e-46 191.0 138 63.0
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 9.4e-46 190.3 148 58.1
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.2e-45 189.9 136 61.8
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.2e-45 189.9 124 66.1
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.6e-45 189.5 143 59.4
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.6e-45 189.5 137 62.8
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.6e-45 189.5 157 59.2
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.7e-45 188.7 157 58.0
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.7e-45 188.7 128 64.8
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.7e-45 188.7 147 58.5
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.7e-45 188.0 128 64.1
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 6.1e-45 187.6 138 63.0
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 6.1e-45 187.6 148 59.5
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.0e-44 186.8 132 63.6
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.0e-44 186.8 154 59.1
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 2.3e-44 185.7 139 61.9
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.3e-44 185.7 134 63.4
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 2.3e-44 185.7 131 62.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.0e-44 184.9 138 60.1
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 4.0e-44 184.9 135 63.0
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.2e-44 184.5 146 59.6
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 5.2e-44 184.5 151 62.9
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 6.7e-44 184.1 136 60.3
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 8.8e-44 183.7 113 69.9
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 2.0e-43 182.6 146 61.0
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.2e-42 179.1 123 65.0
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 4.8e-42 177.9 133 60.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 8.2e-42 177.2 119 65.5
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.1e-41 176.8 121 65.3
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.4e-41 175.6 175 49.7
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 5.3e-41 174.5 132 58.3
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 2.6e-40 172.2 148 56.8
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.6e-40 172.2 143 55.2
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.6e-40 172.2 142 54.9
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.5e-40 171.4 141 56.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 7.7e-40 170.6 128 55.5
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 5.0e-39 167.9 118 59.3
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 5.0e-39 167.9 142 54.2
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.2e-38 165.2 124 62.1
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-33 150.2 141 53.9
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.3e-31 143.3 128 51.6
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 4.7e-29 134.8 77 74.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 4.7e-29 134.8 85 65.9
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-28 133.3 109 52.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.3e-28 132.5 111 54.1
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.8e-26 125.6 121 52.1
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.7e-26 125.2 82 65.9
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 3.7e-26 125.2 75 72.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 8.3e-26 124.0 130 43.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.4e-25 123.2 107 51.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.8e-25 122.9 94 57.4
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 5.6e-22 111.3 89 51.7
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.8e-20 106.3 93 47.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 4.0e-20 105.1 131 43.5
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 4.9e-18 98.2 120 43.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 3.2e-17 95.5 138 39.1
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 3.2e-17 95.5 92 47.8
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.2e-16 93.6 108 43.5
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 3.5e-16 92.0 97 43.3
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-13 83.6 69 56.5
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 8.0e-13 80.9 59 59.3
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 4.1e-09 68.6 114 32.5
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.3e-07 62.8 61 49.2
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 5.0e-07 61.6 90 41.1
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.1e-06 60.5 53 58.5


User provided reference genes

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