Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 6.4e-274 946.8 480 100.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 3.6e-136 489.2 513 54.2
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.5e-129 466.5 484 53.5
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 4.8e-128 462.2 484 54.5
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-125 454.1 472 54.7
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.2e-125 453.4 485 53.6
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.9e-125 452.2 487 52.4
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.5e-125 451.8 479 54.3
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 7.1e-124 448.4 477 54.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.0e-123 445.3 482 52.5
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 6.7e-122 441.8 471 53.9
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-120 436.8 482 52.5
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-119 433.7 489 51.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.8e-119 433.7 482 51.9
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 9.0e-119 431.4 480 50.6
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 9.0e-119 431.4 480 50.6
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 3.4e-118 429.5 475 52.6
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.8e-118 428.7 483 50.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 5.8e-118 428.7 488 52.3
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.0e-117 427.9 477 52.2
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.9e-117 426.4 492 49.4
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.0e-117 425.6 481 50.1
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.4e-116 424.1 475 52.4
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.4e-116 424.1 474 52.1
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.5e-116 423.3 448 54.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 5.5e-116 422.2 448 54.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 7.2e-116 421.8 476 51.3
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.2e-115 421.0 482 51.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 6.1e-115 418.7 475 51.8
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.3e-114 417.5 488 51.4
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 6.7e-114 415.2 476 48.3
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 5.7e-113 412.1 444 52.9
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.2e-112 410.2 465 50.1
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 2.8e-112 409.8 458 48.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.8e-111 407.1 463 49.5
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 4.1e-111 406.0 430 55.1
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 4.1e-111 406.0 482 49.2
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.4e-110 402.9 501 49.5
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.5e-110 402.5 475 48.2
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 4.5e-110 402.5 463 49.7
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 5.9e-110 402.1 395 56.5
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 1.9e-108 397.1 468 48.5
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.2e-108 396.4 514 47.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-107 394.0 429 53.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 6.7e-106 388.7 442 50.5
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.0e-105 387.1 456 49.8
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 7.4e-105 385.2 462 46.5
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 8.2e-104 381.7 456 48.5
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 8.2e-104 381.7 456 48.5
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.4e-103 380.9 466 48.1
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.8e-103 380.6 451 50.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.6e-102 376.7 473 45.9
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.0e-98 363.2 489 46.6
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-87 328.2 437 47.8
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 7.0e-87 325.5 476 45.0
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.8e-82 310.8 392 48.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.5e-76 291.2 459 40.3
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.2e-75 288.1 460 39.8
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 3.1e-71 273.5 458 38.2
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 8.6e-69 265.4 453 38.0
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.2e-67 261.5 463 37.4
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 4.7e-67 259.6 452 38.1
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 8.0e-67 258.8 461 37.5
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.2e-62 245.0 452 36.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 5.9e-62 242.7 459 36.2
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.3e-61 241.5 331 45.9
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.7e-61 241.1 475 34.3
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 2.3e-61 240.7 347 45.8
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.9e-61 240.0 447 36.2
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 6.6e-61 239.2 447 36.0
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.1e-59 234.2 450 36.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.3e-58 230.7 497 32.8
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 5.2e-58 229.6 443 36.1
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.5e-57 225.7 419 37.7
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.2e-56 224.2 457 33.0
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 7.0e-55 219.2 457 35.7
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.2e-54 218.4 169 63.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 7.8e-54 215.7 458 34.3
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.3e-53 214.9 448 31.9
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.7e-53 214.5 458 32.3
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 8.6e-53 212.2 378 39.2
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.1e-52 211.8 401 35.7
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.5e-52 211.5 459 32.2
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.5e-52 211.5 459 32.2
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.5e-52 210.7 459 32.0
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.5e-52 210.7 459 32.0
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.3e-52 210.3 450 32.9
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.1e-51 207.6 453 32.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.8e-51 207.2 437 33.2
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 3.6e-51 206.8 444 31.8
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.1e-50 205.3 454 33.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.8e-49 199.5 360 36.1
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 2.9e-48 197.2 425 34.1
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 5.4e-47 193.0 464 30.6
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 7.8e-46 189.1 439 31.7
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 7.8e-46 189.1 368 35.3
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.3e-45 187.6 376 35.9
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 3.0e-45 187.2 376 34.6
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.9e-45 186.8 183 51.9
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 5.6e-44 183.0 240 46.2
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 9.5e-44 182.2 165 57.0
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.6e-43 180.3 464 32.5
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-42 178.7 357 34.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 8.9e-42 175.6 333 35.1
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.2e-41 175.3 402 32.6
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 8.4e-40 169.1 442 30.5
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.7e-38 164.1 435 30.3
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 7.8e-38 162.5 400 30.8
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 7.8e-38 162.5 162 46.3
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.0e-37 162.2 382 32.5
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.3e-37 161.0 442 27.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.5e-36 157.5 385 33.2
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.5e-36 157.5 382 31.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.6e-36 156.4 163 47.9
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 5.6e-36 156.4 104 69.2
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 7.3e-36 156.0 387 32.3
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.1e-35 154.5 376 29.8
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 3.1e-34 150.6 352 35.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 7.6e-33 146.0 283 38.9
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.2e-31 140.2 390 30.8
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-30 137.9 162 42.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.1e-29 133.3 394 31.0
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-28 131.7 391 31.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-28 131.7 432 28.2
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-28 131.0 149 50.3
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-28 131.0 149 50.3
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.3e-27 128.6 370 31.1
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.8e-27 126.7 420 29.0
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 6.2e-27 126.3 157 49.0
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.7e-24 118.2 160 44.4
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 2.2e-24 117.9 311 30.9
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 2.2e-24 117.9 311 30.9
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 4.9e-24 116.7 299 29.1
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.4e-23 114.4 174 42.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.3e-21 108.6 139 39.6
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-19 102.1 124 46.0
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.1e-19 101.3 121 40.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-18 98.6 300 26.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.8e-18 98.2 108 47.2
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 7.6e-17 92.8 70 55.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.7e-16 91.7 104 46.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.2e-16 91.3 187 32.1
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 9.6e-12 75.9 123 41.5
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-08 64.7 100 33.0
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.1e-07 62.4 67 43.3
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.5e-07 61.2 77 41.6
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 2.5e-07 61.2 74 44.6


User provided reference genes

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