Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.8e-309 1065.1 538 100.0
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 2.4e-237 825.5 554 75.6
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 4.4e-231 804.7 556 75.2
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 6.3e-230 800.8 536 76.1
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.7e-228 795.4 529 75.4
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 5.9e-228 794.3 549 74.1
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 7.8e-228 793.9 552 73.6
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.7e-227 792.7 555 74.4
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.9e-227 792.0 555 73.5
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 2.9e-227 792.0 534 77.0
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.5e-226 789.6 530 76.4
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.6e-226 787.7 570 73.2
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 9.5e-226 786.9 555 73.0
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.2e-225 786.6 555 74.6
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.8e-225 785.4 555 73.0
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.4e-224 783.1 556 72.3
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.8e-224 782.7 535 75.3
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.5e-223 779.6 556 72.1
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 4.4e-223 778.1 548 73.0
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 7.5e-223 777.3 559 71.4
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 7.5e-223 777.3 561 72.7
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.7e-222 775.0 538 73.0
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.9e-221 772.7 525 75.6
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 7.0e-221 770.8 521 75.8
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 2.0e-220 769.2 530 74.3
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.7e-220 768.8 512 76.8
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 7.8e-220 767.3 538 73.8
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.0e-219 766.9 568 68.8
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 3.9e-219 765.0 544 73.5
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 3.9e-219 765.0 551 71.0
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.1e-218 763.5 550 70.9
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 2.5e-218 762.3 507 75.5
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 9.5e-218 760.4 561 69.5
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.2e-217 760.0 527 75.7
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.1e-217 759.2 550 70.4
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.4e-216 756.5 530 72.5
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 5.2e-216 754.6 543 71.3
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 5.8e-215 751.1 511 72.2
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.3e-214 750.0 554 69.9
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.2e-214 749.2 517 72.0
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.9e-214 748.8 530 72.3
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 6.4e-214 747.7 560 71.1
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.4e-213 746.5 547 70.9
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 2.4e-213 745.7 533 71.1
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 2.4e-213 745.7 553 69.1
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.2e-212 743.4 513 72.5
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.6e-212 743.0 551 69.5
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.6e-212 743.0 553 68.5
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.3e-211 739.2 522 70.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.3e-211 739.2 517 72.7
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 2.3e-211 739.2 529 73.0
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 8.6e-211 737.3 533 71.7
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.1e-210 736.9 511 72.4
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.5e-210 735.7 551 69.3
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 4.3e-210 734.9 522 70.5
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.3e-210 734.9 519 72.8
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 5.6e-210 734.6 507 75.3
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 7.3e-210 734.2 553 69.1
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.3e-210 734.2 545 69.2
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.6e-209 733.0 542 70.3
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 3.6e-209 731.9 549 68.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.7e-209 731.5 534 69.5
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 8.1e-209 730.7 516 70.3
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.4e-208 729.9 531 70.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.8e-208 729.6 536 68.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 2.0e-207 726.1 543 68.9
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 9.9e-207 723.8 558 67.4
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.2e-206 722.6 465 76.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.7e-206 721.8 517 71.2
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.4e-205 719.9 511 72.6
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.9e-205 719.5 530 68.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 9.2e-205 717.2 522 69.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.6e-204 716.5 635 61.3
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.7e-204 715.7 539 67.7
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 3.5e-204 715.3 508 69.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 6.0e-204 714.5 532 67.7
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.0e-203 713.8 508 69.7
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.3e-203 712.6 508 69.5
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 3.0e-203 712.2 532 67.9
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.6e-202 708.0 572 65.6
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 2.4e-200 702.6 484 74.0
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.4e-200 702.6 514 71.0
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.1e-200 702.2 545 67.2
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 4.0e-200 701.8 442 76.7
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.2e-199 700.3 542 67.2
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 9.9e-199 697.2 509 70.7
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.7e-198 696.4 502 70.9
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 4.9e-198 694.9 446 74.7
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.2e-197 692.2 560 65.5
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.7e-196 689.1 466 73.0
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 3.5e-196 688.7 537 64.6
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 4.6e-196 688.3 419 78.8
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.3e-195 686.0 461 73.5
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.5e-194 683.3 509 69.9
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.2e-191 673.7 514 69.3
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 3.8e-190 668.7 543 68.0
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 5.4e-189 664.8 527 66.4
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 5.6e-178 628.2 374 82.9
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.6e-175 619.4 408 75.7
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.8e-171 606.7 527 59.4
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 3.5e-164 582.4 362 81.5
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 2.5e-149 533.1 389 71.2
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 2.1e-148 530.0 451 57.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.7e-148 529.6 460 57.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.7e-145 520.4 397 68.0
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.0e-139 501.1 435 56.6
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 9.8e-130 468.0 439 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.2e-111 407.9 473 48.2
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 6.4e-105 385.6 532 44.9
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.9e-104 384.0 558 42.1
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.6e-103 379.4 533 45.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.1e-100 370.5 543 45.1
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 8.1e-100 368.6 439 49.7
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 8.9e-99 365.2 477 43.0
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.3e-97 361.3 549 43.7
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.9e-93 347.4 512 43.8
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.2e-92 344.7 255 70.2
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-88 331.6 543 41.6
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.2e-84 318.2 176 85.2
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.5e-77 294.7 480 38.1
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 4.9e-65 253.1 169 72.2
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 7.6e-50 202.6 183 63.4
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 2.3e-46 191.0 150 66.7
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 6.5e-41 172.9 188 53.7
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 3.6e-31 140.6 84 82.1
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.1e-29 135.6 131 56.5
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.3e-29 134.0 105 64.8
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.6e-18 98.6 141 41.1
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 2.6e-13 81.3 119 49.6
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.3e-12 79.0 104 50.0
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-12 79.0 124 40.3
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.1e-11 74.3 116 52.6
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.1e-11 72.8 118 39.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.9e-09 67.8 58 62.1
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 2.9e-09 67.8 102 50.0
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.2e-07 62.4 38 76.3


User provided reference genes

Program Settings