Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.1e-98 362.5 199 100.0
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.8e-57 226.5 196 64.8
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 4.5e-56 221.9 196 64.3
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.1e-54 217.2 199 61.3
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 5.5e-54 214.9 191 62.3
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 2.1e-53 213.0 129 82.9
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 4.7e-53 211.8 129 82.9
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 3.9e-52 208.8 130 82.3
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 8.8e-52 207.6 198 63.1
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 8.8e-52 207.6 200 61.5
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.1e-51 207.2 129 81.4
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.5e-51 206.8 199 60.3
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.5e-51 206.8 129 79.1
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 2.6e-51 206.1 127 80.3
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 2.6e-51 206.1 191 61.3
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 5.7e-51 204.9 193 60.6
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 5.7e-51 204.9 195 59.5
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 5.7e-51 204.9 173 65.3
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 1.3e-50 203.8 134 79.9
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.3e-50 203.8 203 58.1
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 1.3e-50 203.8 200 60.0
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.3e-50 203.8 195 59.0
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.7e-50 203.4 199 59.8
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 2.2e-50 203.0 181 61.9
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 2.2e-50 203.0 195 59.0
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 2.8e-50 202.6 119 82.4
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 2.8e-50 202.6 129 78.3
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 3.7e-50 202.2 167 65.9
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 4.8e-50 201.8 130 80.0
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 4.8e-50 201.8 200 59.0
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 8.2e-50 201.1 199 58.8
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 1.1e-49 200.7 167 68.3
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 1.4e-49 200.3 129 82.2
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.4e-49 200.3 202 61.4
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 3.1e-49 199.1 176 63.1
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 5.3e-49 198.4 199 62.3
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 7.0e-49 198.0 157 69.4
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 9.1e-49 197.6 130 74.6
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.2e-48 197.2 181 61.3
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.2e-48 197.2 128 75.8
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 2.6e-48 196.1 180 61.7
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.5e-48 195.7 133 74.4
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 4.5e-48 195.3 122 82.0
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 5.9e-48 194.9 220 55.9
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 7.7e-48 194.5 129 75.2
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 7.7e-48 194.5 107 88.8
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 7.7e-48 194.5 129 77.5
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 7.7e-48 194.5 126 79.4
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.0e-47 194.1 191 58.6
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 1.0e-47 194.1 114 83.3
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.0e-47 194.1 116 82.8
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.0e-47 194.1 129 77.5
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 1.3e-47 193.7 115 82.6
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.3e-47 193.7 182 59.9
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.7e-47 193.4 107 87.9
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.7e-47 193.4 131 75.6
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.2e-47 193.0 195 57.4
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.9e-47 192.6 180 59.4
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.8e-47 192.2 107 86.9
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 3.8e-47 192.2 186 59.7
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 6.5e-47 191.4 128 77.3
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 8.5e-47 191.0 115 82.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 8.5e-47 191.0 176 61.9
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.5e-46 190.3 112 86.6
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 3.2e-46 189.1 168 61.3
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 4.2e-46 188.7 103 89.3
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 7.2e-46 188.0 189 58.2
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.2e-45 187.2 175 64.6
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 1.2e-45 187.2 126 78.6
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 2.7e-45 186.0 181 60.8
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 4.7e-45 185.3 193 57.0
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.7e-45 185.3 127 74.8
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 6.1e-45 184.9 113 80.5
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 8.0e-45 184.5 181 60.2
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.0e-44 184.1 167 64.7
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.4e-44 183.7 191 58.1
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.4e-44 183.7 115 79.1
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.3e-44 183.0 191 59.2
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 3.0e-44 182.6 135 73.3
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 6.7e-44 181.4 106 83.0
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.7e-44 181.4 191 57.6
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 6.7e-44 181.4 128 75.0
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 6.7e-44 181.4 128 75.0
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.8e-44 181.0 191 58.6
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 8.8e-44 181.0 136 70.6
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.2e-43 180.6 119 73.1
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.5e-43 180.3 191 57.6
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 5.7e-43 178.3 128 74.2
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 7.5e-43 177.9 128 74.2
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.7e-42 176.8 129 72.1
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 2.2e-42 176.4 129 72.9
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 2.2e-42 176.4 110 80.9
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.1e-41 174.1 111 80.2
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.4e-41 173.7 168 59.5
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 2.4e-41 172.9 113 77.0
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 3.1e-41 172.6 110 79.1
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 4.1e-41 172.2 107 80.4
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 4.1e-41 172.2 107 80.4
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 4.1e-41 172.2 107 80.4
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 7.0e-41 171.4 107 80.4
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 2.2e-39 166.4 117 70.9
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 3.2e-38 162.5 186 55.9
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 9.4e-38 161.0 121 69.4
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 7.0e-33 144.8 199 50.8
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 3.5e-32 142.5 88 83.0
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 3.5e-32 142.5 112 70.5
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.3e-31 140.6 145 57.2
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.0e-27 126.7 80 80.0
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.3e-26 124.0 65 90.8
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.3e-26 124.0 65 90.8
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 2.8e-26 122.9 65 89.2
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 7.0e-25 118.2 114 57.9
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.2e-24 117.5 60 95.0
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 3.5e-24 115.9 121 57.0
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 7.8e-24 114.8 106 59.4
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.0e-23 114.4 62 88.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.9e-23 112.8 113 56.6
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.9e-23 112.8 120 56.7
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 2.5e-22 109.8 132 50.0
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 2.8e-21 106.3 62 83.9
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 5.7e-19 98.6 92 58.7
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 6.4e-18 95.1 106 54.7
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 2.4e-17 93.2 76 59.2
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 7.0e-17 91.7 118 53.4
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.0e-15 87.8 66 68.2
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 3.0e-15 86.3 64 70.3
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.9e-15 85.9 89 51.7
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.5e-14 83.2 94 48.9
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 1.9e-09 67.0 78 51.3
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 7.8e-08 61.6 85 47.1
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.3e-07 60.8 88 44.3


User provided reference genes

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