Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 2.4e-117 427.2 212 100.0
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 3.5e-60 237.3 194 60.8
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 6.1e-57 226.5 194 58.2
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.0e-56 225.7 199 59.8
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 5.8e-55 219.9 196 60.7
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 9.8e-55 219.2 155 65.8
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 3.7e-54 217.2 194 56.7
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 3.7e-54 217.2 162 63.6
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 1.1e-53 215.7 143 67.8
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 3.2e-53 214.2 155 64.5
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 5.4e-53 213.4 165 61.2
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 4.6e-52 210.3 153 64.7
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 7.8e-52 209.5 159 62.3
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 6.6e-51 206.5 159 64.2
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 8.6e-51 206.1 155 61.9
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 8.6e-51 206.1 160 63.8
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 8.6e-51 206.1 147 64.6
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.5e-50 205.3 161 64.0
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 1.5e-50 205.3 162 60.5
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 4.3e-50 203.8 159 61.6
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 7.3e-50 203.0 155 60.6
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 7.3e-50 203.0 157 62.4
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.2e-49 202.2 169 57.4
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.6e-49 201.8 155 60.0
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 2.8e-49 201.1 162 60.5
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 4.7e-49 200.3 160 61.9
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 4.7e-49 200.3 212 51.4
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 6.2e-49 199.9 156 60.3
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 6.2e-49 199.9 156 60.3
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 8.0e-49 199.5 156 60.3
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.0e-49 199.5 169 56.8
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 1.1e-48 199.1 156 60.3
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.1e-48 199.1 147 61.9
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 1.8e-48 198.4 152 61.2
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.9e-48 196.1 169 55.6
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 1.5e-47 195.3 196 53.1
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 1.5e-47 195.3 193 54.4
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 4.4e-47 193.7 194 53.6
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 7.5e-47 193.0 159 60.4
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.3e-46 192.2 190 52.6
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 2.9e-46 191.0 142 64.1
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 3.7e-46 190.7 149 60.4
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 3.7e-46 190.7 207 47.8
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 4.6e-44 183.7 151 60.9
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 4.6e-44 183.7 184 53.8
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 6.6e-43 179.9 162 56.2
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.1e-42 179.1 154 56.5
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 2.5e-42 177.9 149 56.4
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 3.3e-42 177.6 133 59.4
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 5.6e-42 176.8 163 53.4
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.4e-40 172.2 151 51.7
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 1.4e-40 172.2 126 61.1
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 3.1e-40 171.0 147 57.1
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 5.2e-40 170.2 172 50.6
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 3.4e-39 167.5 148 52.7
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 2.2e-38 164.9 141 53.2
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.4e-37 162.2 169 49.7
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 2.4e-37 161.4 160 52.5
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 3.2e-37 161.0 151 51.0
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.0e-35 156.0 164 46.3
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 5.1e-35 153.7 157 52.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.5e-34 152.1 101 74.3
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.5e-34 152.1 121 57.9
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 2.1e-33 148.3 159 49.1
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 6.2e-33 146.7 193 42.0
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.1e-32 146.0 146 53.4
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 2.4e-32 144.8 116 56.9
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 4.0e-32 144.1 116 56.9
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 2.0e-31 141.7 146 51.4
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 2.6e-31 141.4 144 52.8
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 2.6e-31 141.4 144 50.7
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 4.4e-31 140.6 147 52.4
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 5.8e-31 140.2 198 42.9
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 3.8e-30 137.5 147 49.0
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 3.8e-30 137.5 147 49.0
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 6.4e-30 136.7 143 51.7
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 6.4e-30 136.7 143 51.7
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 4.2e-29 134.0 170 42.9
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 5.4e-29 133.7 100 62.0
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 7.1e-29 133.3 143 46.9
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 1.2e-28 132.5 143 46.9
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 4.6e-28 130.6 143 49.0
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.7e-27 128.6 114 55.3
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 6.6e-27 126.7 157 45.9
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 8.7e-27 126.3 165 44.8
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 1.9e-26 125.2 161 46.0
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 3.3e-26 124.4 85 70.6
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 5.6e-26 123.6 147 43.5
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.1e-25 121.7 102 58.8
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 1.4e-24 119.0 85 83.5
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 3.1e-24 117.9 102 55.9
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 5.3e-24 117.1 83 84.3
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 2.6e-23 114.8 83 81.9
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 4.4e-23 114.0 85 78.8
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 5.8e-23 113.6 85 80.0
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 7.6e-23 113.2 85 81.2
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 6.4e-22 110.2 83 66.3
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 6.0e-20 103.6 83 65.1
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 6.6e-19 100.1 113 48.7
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 9.6e-18 96.3 85 58.8
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.6e-17 95.5 87 52.9
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 1.8e-16 92.0 145 36.6
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 2.4e-16 91.7 83 55.4
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 3.4e-15 87.8 72 55.6
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 2.4e-13 81.6 80 42.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.1e-10 72.8 62 56.5
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 2.1e-09 68.6 83 57.8
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 2.1e-09 68.6 56 60.7
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 1.5e-07 62.4 135 28.9
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 2.6e-07 61.6 48 64.6
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 2.2e-06 58.5 108 36.1
Cpa.g.sc104.1 Carica papaya HOM05D006596 ORTHO05D008497 2.9e-06 58.2 113 29.2
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 3.8e-06 57.8 109 33.0
Oeu033075.1 Olea europaea HOM05D006464 ORTHO05D007923 6.4e-06 57.0 83 33.7
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 8.4e-06 56.6 181 26.5
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 8.4e-06 56.6 108 35.2


User provided reference genes

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