Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 0.0e+00 1513.0 763 100.0
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 2.6e-309 1065.1 780 70.5
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 2.6e-306 1055.0 780 69.1
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 3.2e-304 1048.1 780 69.7
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 4.2e-304 1047.7 780 69.6
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 2.7e-303 1045.0 780 69.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 2.3e-302 1042.0 779 68.5
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 4.4e-301 1037.7 776 67.8
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.1e-299 1033.1 779 68.7
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.2e-298 1029.6 780 67.6
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.8e-297 1024.6 784 67.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.9e-296 1022.3 779 67.0
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 3.0e-294 1015.0 772 67.6
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 5.2e-294 1014.2 779 67.4
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.2e-293 1013.1 774 67.3
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.3e-292 1009.6 777 66.3
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 1.4e-291 1006.1 779 66.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 4.1e-291 1004.6 781 66.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 9.1e-291 1003.4 782 66.2
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 2.7e-290 1001.9 780 65.6
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 7.7e-290 1000.3 797 65.5
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 1.7e-289 999.2 791 64.7
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 2.9e-289 998.4 780 66.5
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 8.6e-289 996.9 770 65.3
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 7.2e-288 993.8 778 64.7
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 9.5e-288 993.4 772 65.5
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.6e-287 991.5 773 66.9
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.6e-287 991.5 790 65.7
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 6.1e-287 990.7 778 64.4
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 8.0e-287 990.3 777 65.8
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 8.0e-287 990.3 779 64.8
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.0e-286 989.9 772 66.7
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.2e-285 986.5 780 66.0
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 6.3e-284 980.7 779 63.4
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 8.3e-284 980.3 781 64.9
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 3.1e-283 978.4 797 63.4
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 3.1e-283 978.4 866 59.1
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 7.8e-282 973.8 780 63.6
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-281 973.0 882 59.4
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 4.3e-280 968.0 779 63.7
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.2e-279 966.5 772 65.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 8.0e-279 963.8 782 63.3
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 2.9e-276 955.3 780 63.5
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 6.4e-276 954.1 751 65.6
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.4e-275 953.0 777 62.9
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.4e-275 953.0 773 63.1
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.9e-275 952.6 777 62.5
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.9e-275 952.6 772 62.4
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.6e-274 949.5 776 62.8
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.7e-273 946.0 778 62.1
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.7e-273 946.0 777 62.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 3.0e-273 945.3 772 62.8
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 3.9e-273 944.9 773 62.1
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.9e-273 944.9 848 59.0
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 5.0e-273 944.5 773 62.6
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 3.3e-272 941.8 773 62.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.2e-271 939.9 782 61.4
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.8e-271 938.7 782 62.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 1.4e-270 936.4 780 62.2
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 3.1e-270 935.3 782 62.5
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 4.0e-270 934.9 774 61.2
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 5.2e-270 934.5 780 62.7
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 6.8e-270 934.1 748 63.6
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.9e-270 933.7 780 60.8
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 3.4e-269 931.8 780 60.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 7.5e-269 930.6 782 61.9
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-267 926.8 779 62.0
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.9e-267 926.0 779 61.1
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 3.5e-266 921.8 799 59.9
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 1.0e-265 920.2 779 61.7
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 3.0e-265 918.7 785 61.8
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.2e-263 913.3 880 56.0
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.8e-262 909.4 782 59.1
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.3e-262 909.1 773 60.3
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 2.0e-261 906.0 773 61.2
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.5e-261 904.0 780 60.4
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 3.7e-260 901.7 779 60.5
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 2.7e-258 895.6 785 60.1
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 1.4e-251 873.2 734 62.5
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.0e-250 867.8 746 59.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 6.2e-247 857.8 786 57.5
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 9.9e-245 850.5 722 64.1
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 8.4e-244 847.4 774 58.7
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 4.9e-236 821.6 791 54.0
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.5e-232 810.1 784 55.6
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 5.8e-229 798.1 780 56.2
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 8.2e-207 724.5 780 50.5
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.1e-194 681.8 541 66.7
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.8e-190 670.2 528 65.7
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 7.2e-187 658.3 499 66.1
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-173 613.2 461 67.2
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.9e-171 607.1 478 64.9
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 7.2e-171 605.1 771 47.2
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.5e-160 570.9 595 53.8
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.2e-149 534.6 795 40.5
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 3.7e-143 513.1 785 39.1
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.2e-142 508.4 404 65.3
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.3e-131 473.4 514 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 6.7e-108 396.0 752 35.0
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.7e-108 396.0 499 49.1
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 2.5e-99 367.5 835 30.4
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 4.1e-97 360.1 419 50.4
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.2e-94 350.1 379 50.9
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 3.3e-91 340.5 434 46.8
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.5e-86 323.2 219 73.1
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.5e-78 297.7 191 70.7
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 2.8e-74 284.3 266 57.9
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.8e-74 284.3 394 41.6
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.0e-71 275.8 372 45.2
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 2.4e-65 254.6 200 60.0
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.8e-60 236.5 191 66.5
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.2e-48 199.1 741 27.3
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.3e-42 179.1 318 39.0
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 5.0e-39 167.2 225 41.8
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 1.4e-36 159.1 173 56.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 5.8e-35 153.7 114 60.5
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-34 152.5 256 40.2
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 8.9e-28 129.8 138 52.2
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-27 129.4 90 67.8
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.5e-27 129.0 87 65.5
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 3.4e-27 127.9 460 23.5
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.3e-26 125.9 109 55.0
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.9e-25 122.1 109 54.1
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-24 119.4 79 77.2
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-23 115.5 83 65.1
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 6.6e-23 113.6 311 30.5
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.9e-22 112.1 76 65.8
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 9.6e-22 109.8 62 79.0
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 2.1e-21 108.6 92 58.7
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.8e-21 108.2 83 61.4
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 8.1e-21 106.7 357 26.1
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.4e-20 105.9 60 83.3
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.8e-20 105.5 62 77.4
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.4e-20 105.1 105 52.4
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-18 98.6 76 59.2
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 8.4e-18 96.7 130 37.7
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.1e-17 93.6 55 74.5
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 9.3e-17 93.2 59 78.0
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 6.0e-16 90.5 62 74.2
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.7e-15 89.0 62 66.1
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.3e-15 88.6 61 63.9
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 3.0e-15 88.2 72 55.6
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.9e-15 87.8 71 57.7
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 8.7e-15 86.7 56 76.8
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-14 85.5 64 64.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.6e-14 84.0 55 69.1
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.6e-14 83.2 71 60.6
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.1e-12 79.7 80 48.8
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.2e-11 76.3 55 63.6
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.2e-11 76.3 55 63.6
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-09 69.3 83 47.0
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 2.1e-08 65.5 46 67.4
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 8.7e-07 60.1 31 80.6
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 5.6e-06 57.4 72 40.3


User provided reference genes

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