Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.2e-119 433.3 235 100.0
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 5.9e-55 218.4 181 66.3
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 3.8e-54 215.7 217 61.8
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 6.5e-54 214.9 216 60.2
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.0e-51 206.1 218 57.8
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 2.8e-49 199.5 205 57.6
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 3.7e-49 199.1 182 65.4
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 3.7e-49 199.1 197 61.4
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.2e-49 198.0 212 58.0
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.2e-49 198.0 212 57.1
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 8.2e-49 198.0 204 58.8
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 7.0e-48 194.9 190 62.1
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.2e-47 194.1 182 63.2
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 4.5e-47 192.2 202 58.4
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 5.9e-47 191.8 204 56.4
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 7.7e-47 191.4 212 59.0
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 1.0e-46 191.0 182 61.5
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.0e-46 191.0 213 55.9
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.7e-46 190.3 201 60.7
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.9e-46 189.5 182 59.9
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 3.8e-46 189.1 198 57.6
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 3.8e-46 189.1 224 54.0
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 3.8e-46 189.1 209 55.5
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 5.0e-46 188.7 182 62.6
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 6.5e-46 188.3 198 56.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 8.5e-46 188.0 173 61.8
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.5e-45 187.2 158 67.1
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.9e-45 186.8 182 60.4
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.5e-45 186.4 206 56.3
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 3.2e-45 186.0 201 57.2
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 3.2e-45 186.0 182 62.1
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.2e-44 184.1 216 55.1
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 1.2e-44 184.1 201 56.7
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 2.1e-44 183.3 182 59.9
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 2.7e-44 183.0 182 59.9
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 4.7e-44 182.2 224 54.5
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 6.1e-44 181.8 182 59.9
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.0e-43 181.0 218 51.4
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.0e-43 181.0 200 56.0
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.0e-43 181.0 212 51.4
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.4e-43 180.6 181 58.0
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.4e-43 180.6 230 53.9
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 2.3e-43 179.9 221 52.0
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 4.0e-43 179.1 212 52.8
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 4.0e-43 179.1 182 58.2
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 6.7e-43 178.3 211 54.0
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 6.7e-43 178.3 183 59.0
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.1e-42 177.6 206 54.4
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.1e-42 177.6 220 52.3
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.5e-42 177.2 199 56.3
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.5e-42 177.2 145 69.7
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.5e-42 177.2 209 52.6
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 3.3e-42 176.0 220 51.4
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 3.3e-42 176.0 178 56.7
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 3.3e-42 176.0 145 69.7
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 5.7e-42 175.3 219 51.1
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 7.5e-42 174.9 209 50.2
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 7.5e-42 174.9 182 56.6
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.3e-41 174.1 195 54.4
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.3e-41 174.1 182 53.8
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.7e-41 173.7 199 53.8
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 2.8e-41 172.9 220 51.8
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 2.8e-41 172.9 145 68.3
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 4.8e-41 172.2 211 50.7
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 4.8e-41 172.2 182 54.9
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 6.3e-41 171.8 182 53.8
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 4.1e-40 169.1 178 55.6
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.1e-40 169.1 241 45.6
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 5.3e-40 168.7 201 53.2
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 5.3e-40 168.7 225 48.0
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 7.0e-40 168.3 224 47.8
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 9.1e-40 167.9 182 54.4
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 9.1e-40 167.9 199 54.8
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.7e-39 166.4 181 54.1
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.5e-39 165.6 182 56.6
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 7.7e-39 164.9 183 55.2
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.0e-38 164.5 188 47.9
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.0e-38 164.5 209 50.7
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.9e-38 162.9 214 49.1
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 2.9e-38 162.9 157 59.2
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 6.5e-38 161.8 143 65.0
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.5e-37 159.8 196 51.5
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 4.2e-37 159.1 196 52.0
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.1e-36 156.8 196 51.5
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.1e-36 156.8 144 63.9
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 2.7e-36 156.4 150 64.7
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 2.7e-36 156.4 204 50.0
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 6.1e-36 155.2 144 60.4
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 8.0e-36 154.8 181 53.6
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.4e-35 154.1 143 61.5
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 4.0e-35 152.5 143 59.4
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 8.8e-35 151.4 209 46.9
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-34 150.6 201 48.3
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.5e-34 150.6 201 48.3
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 1.5e-34 150.6 267 42.7
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 2.0e-34 150.2 184 53.3
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 2.6e-34 149.8 144 61.1
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 3.4e-34 149.4 193 47.2
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 4.4e-34 149.1 212 45.8
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 5.7e-34 148.7 211 46.9
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 5.7e-34 148.7 210 47.1
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 9.8e-34 147.9 215 46.5
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.3e-33 147.5 200 48.0
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.3e-33 147.5 211 44.5
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.2e-33 146.7 222 44.1
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 4.8e-33 145.6 201 47.3
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 4.8e-33 145.6 201 47.3
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 4.8e-33 145.6 215 43.7
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.1e-32 144.4 200 47.5
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.1e-32 144.4 210 44.3
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 3.1e-32 142.9 176 51.7
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.6e-31 140.6 210 46.2
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 5.9e-31 138.7 175 48.6
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 7.7e-31 138.3 207 44.0
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 7.7e-31 138.3 207 44.0
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 7.7e-31 138.3 207 44.0
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 3.2e-29 132.9 104 76.0
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 4.7e-28 129.0 204 43.6
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 6.1e-28 128.6 210 44.8
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 4.0e-27 125.9 161 49.7
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 7.5e-26 121.7 202 41.6
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.8e-25 119.8 146 49.3
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 8.3e-25 118.2 212 42.0
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.2e-23 114.4 179 44.1
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 1.6e-23 114.0 115 57.4
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 3.5e-23 112.8 131 55.7
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 7.7e-23 111.7 216 39.4
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 7.7e-23 111.7 193 40.4
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 5.6e-21 105.5 113 60.2
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 5.6e-21 105.5 220 38.2
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 2.0e-18 97.1 148 38.5
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.9e-17 92.4 126 46.0
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 8.3e-17 91.7 251 32.7
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 4.1e-16 89.4 151 38.4
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 5.4e-16 89.0 80 68.8
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 7.0e-16 88.6 156 41.7
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 4.3e-13 79.3 81 58.0
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 4.3e-13 79.3 110 44.5
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.8e-12 76.6 83 59.0
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 3.6e-12 76.3 157 40.1
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.5e-10 70.9 97 44.3
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.0e-10 70.5 91 48.4
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.0e-10 70.5 160 33.8
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.6e-10 70.1 127 35.4
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 4.9e-09 65.9 100 39.0
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.2e-07 61.2 104 37.5


User provided reference genes

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