Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 1.1e-43 179.5 84 100.0
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.7e-36 155.6 84 88.1
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 2.9e-36 154.8 84 83.3
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.1e-35 152.9 84 84.5
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.8e-35 152.1 84 84.5
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 2.4e-35 151.8 84 82.1
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 2.4e-35 151.8 85 83.5
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 2.4e-35 151.8 84 85.7
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 3.2e-35 151.4 80 83.8
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 3.2e-35 151.4 84 83.3
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 3.2e-35 151.4 84 81.0
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 5.4e-35 150.6 85 81.2
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 7.0e-35 150.2 84 79.8
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 7.0e-35 150.2 84 83.3
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 9.2e-35 149.8 84 83.3
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.2e-34 149.4 84 83.3
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 1.2e-34 149.4 87 80.5
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 1.2e-34 149.4 85 84.7
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.6e-34 149.1 84 83.3
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.6e-34 149.1 84 82.1
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.0e-34 148.7 84 83.3
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.7e-34 148.3 87 80.5
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 2.7e-34 148.3 84 82.1
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 3.5e-34 147.9 85 80.0
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 3.5e-34 147.9 84 82.1
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 4.6e-34 147.5 87 80.5
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 4.6e-34 147.5 86 80.2
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 4.6e-34 147.5 87 80.5
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 5.9e-34 147.1 84 82.1
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 7.8e-34 146.7 87 80.5
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 7.8e-34 146.7 84 81.0
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 7.8e-34 146.7 84 81.0
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 1.0e-33 146.4 84 79.8
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 1.0e-33 146.4 81 80.2
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 1.3e-33 146.0 87 79.3
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 1.3e-33 146.0 84 81.0
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 2.3e-33 145.2 84 82.1
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.3e-33 145.2 84 79.8
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 3.0e-33 144.8 84 78.6
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 3.0e-33 144.8 84 78.6
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 3.0e-33 144.8 84 81.0
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 3.0e-33 144.8 84 79.8
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 3.0e-33 144.8 87 77.0
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 78.6
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 78.6
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 79.5
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 78.6
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 5.0e-33 144.1 86 76.7
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 5.0e-33 144.1 87 77.0
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 5.0e-33 144.1 86 76.7
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 6.6e-33 143.7 84 82.1
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 6.6e-33 143.7 86 76.7
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 6.6e-33 143.7 86 74.4
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 6.6e-33 143.7 87 79.3
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 6.6e-33 143.7 84 77.4
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 6.6e-33 143.7 84 79.8
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 8.6e-33 143.3 84 78.6
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 8.6e-33 143.3 86 80.2
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 8.6e-33 143.3 86 76.7
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 8.6e-33 143.3 84 79.8
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 8.6e-33 143.3 86 76.7
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 1.1e-32 142.9 84 79.8
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 1.1e-32 142.9 84 78.6
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 1.1e-32 142.9 84 78.6
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 1.5e-32 142.5 80 80.0
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 78.6
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 1.9e-32 142.1 84 78.6
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 1.9e-32 142.1 84 79.8
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 1.9e-32 142.1 84 79.8
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 2.5e-32 141.7 81 79.0
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 2.5e-32 141.7 85 78.8
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 2.5e-32 141.7 84 78.6
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 2.5e-32 141.7 84 77.4
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 3.3e-32 141.4 84 78.6
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 3.3e-32 141.4 84 78.6
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 3.3e-32 141.4 86 79.1
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 3.3e-32 141.4 86 77.9
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 3.3e-32 141.4 84 76.2
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 4.3e-32 141.0 84 77.4
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 4.3e-32 141.0 81 79.0
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 4.3e-32 141.0 81 79.0
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 4.3e-32 141.0 83 78.3
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 7.3e-32 140.2 82 76.8
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 7.3e-32 140.2 82 76.8
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 7.3e-32 140.2 84 78.6
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 9.5e-32 139.8 84 78.6
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 9.5e-32 139.8 83 79.5
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 1.2e-31 139.4 81 77.8
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 1.2e-31 139.4 84 75.0
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 1.2e-31 139.4 84 75.0
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.2e-31 139.4 83 75.9
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 1.6e-31 139.0 84 75.0
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.6e-31 139.0 84 75.0
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 2.1e-31 138.7 85 78.8
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 2.1e-31 138.7 85 78.8
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 2.1e-31 138.7 83 74.7
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 75.0
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 78.6
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 2.8e-31 138.3 82 75.6
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.8e-31 138.3 83 72.3
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.6e-31 137.9 83 73.5
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 3.6e-31 137.9 86 73.3
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 4.7e-31 137.5 84 76.2
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 6.2e-31 137.1 84 73.8
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 8.0e-31 136.7 84 72.6
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 8.0e-31 136.7 84 73.8
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.1e-30 136.3 84 72.6
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.4e-30 136.0 81 76.5
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 1.4e-30 136.0 71 83.1
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 1.4e-30 136.0 71 83.1
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.8e-30 135.6 84 75.0
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.8e-30 135.6 84 75.0
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.8e-30 135.6 69 85.5
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.3e-30 135.2 83 71.1
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 2.3e-30 135.2 68 86.8
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 77.4
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 3.1e-30 134.8 85 76.5
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 5.2e-30 134.0 75 80.0
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 6.8e-30 133.7 81 74.1
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 72.6
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.2e-29 132.9 71 81.7
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.2e-29 132.9 79 74.7
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 2.6e-29 131.7 84 73.8
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 2.6e-29 131.7 83 72.3
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.8e-29 130.6 74 81.1
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 4.9e-28 127.5 64 82.8
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 1.9e-27 125.6 72 75.0
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 5.4e-27 124.0 83 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 7.0e-27 123.6 84 70.2
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.6e-26 122.5 62 85.5
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 4.6e-26 120.9 65 81.5
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 3.9e-25 117.9 58 87.9
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 1.1e-24 116.3 54 92.6
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 8.1e-23 110.2 69 69.6
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.1e-22 109.8 51 90.2
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 1.1e-22 109.8 54 85.2
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 4.0e-22 107.8 64 75.0
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 7.5e-21 103.6 77 57.1
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 4.6e-18 94.4 62 67.7
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 3.3e-16 88.2 59 61.0
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 4.3e-16 87.8 45 82.2


User provided reference genes

Program Settings